RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 BTBD11A6QL63 1104 aa13.57□□□□□ -0.24
DDX56-203ENST00000421223 AXIN2Q9Y2T1 843 aa13.57□□□□□ -0.24
DDX56-203ENST00000421223 CDC45O75419 566 aa13.56□□□□□ -0.24
DDX56-203ENST00000421223 CSB-PGBD3P0DP91 1061 aa13.56□□□□□ -0.24
DDX56-203ENST00000421223 ATF3P18847 181 aa13.56□□□□□ -0.24
DDX56-203ENST00000421223 GSE1Q14687 1217 aa13.56□□□□□ -0.24
DDX56-203ENST00000421223 LRRFIP2Q9Y608 721 aaKnown RBP13.56□□□□□ -0.24
DDX56-203ENST00000421223 HTATSF1O43719 755 aaKnown RBP13.56□□□□□ -0.24
DDX56-203ENST00000421223 PLEKHO1Q53GL0 409 aaPredicted RBP13.56□□□□□ -0.24
DDX56-203ENST00000421223 CHPF2Q9P2E5 772 aa13.56□□□□□ -0.24
DDX56-203ENST00000421223 RGS12O14924 1447 aa13.55□□□□□ -0.24
DDX56-203ENST00000421223 NPHP4O75161 1426 aaPredicted RBP13.55□□□□□ -0.24
DDX56-203ENST00000421223 PNMA6EA0A0J9YXQ4 647 aa13.55□□□□□ -0.24
DDX56-203ENST00000421223 CHRNA2Q15822 529 aa13.55□□□□□ -0.24
DDX56-203ENST00000421223 TTC22Q5TAA0 569 aa13.54□□□□□ -0.24
DDX56-203ENST00000421223 IL1RAPL2Q9NP60 686 aa13.54□□□□□ -0.24
DDX56-203ENST00000421223 UBTFL1P0CB47 393 aaPredicted RBP13.54□□□□□ -0.24
DDX56-203ENST00000421223 SDSP20132 328 aa13.54□□□□□ -0.24
DDX56-203ENST00000421223 AIMP1Q12904 312 aaKnown RBP13.54□□□□□ -0.24
DDX56-203ENST00000421223 GZF1Q9H116 711 aaPredicted RBP13.54□□□□□ -0.24
DDX56-203ENST00000421223 TRIM6-TRIM34B2RNG4 842 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 RILPL2Q969X0 211 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 PRAMEF22A3QJZ6 481 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 PI4KAP2A4QPH2 592 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 GNAI3P08754 354 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 ARHGEF25Q86VW2 580 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 PI4KAP1Q8N8J0 262 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 IL27Q8NEV9 243 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 C19orf44Q9H6X5 657 aa13.53□□□□□ -0.24
DDX56-203ENST00000421223 XRN1Q8IZH2 1706 aaKnown RBP13.52□□□□□ -0.24
DDX56-203ENST00000421223 ADGRL3Q9HAR2 1447 aa13.52□□□□□ -0.24
DDX56-203ENST00000421223 CD2BP2O95400 341 aaKnown RBP13.52□□□□□ -0.25
DDX56-203ENST00000421223 EIF4A1P60842 406 aaKnown RBP13.52□□□□□ -0.25
DDX56-203ENST00000421223 SLC39A6Q13433 755 aa13.52□□□□□ -0.25
DDX56-203ENST00000421223 ATP10DQ9P241 1426 aa13.52□□□□□ -0.25
DDX56-203ENST00000421223 ANTXR1Q9H6X2 564 aa13.51□□□□□ -0.25
DDX56-203ENST00000421223 CASC1Q6TDU7 716 aa13.51□□□□□ -0.25
DDX56-203ENST00000421223 SRCIN1Q9C0H9 1055 aa13.51□□□□□ -0.25
DDX56-203ENST00000421223 USP44Q9H0E7 712 aa13.51□□□□□ -0.25
DDX56-203ENST00000421223 NALCNQ8IZF0 1738 aa13.51□□□□□ -0.25
DDX56-203ENST00000421223 SURF6O75683 361 aaKnown RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 MAP4K4O95819 1239 aaPredicted RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 AKAP4Q5JQC9 854 aa13.5□□□□□ -0.25
DDX56-203ENST00000421223 RAPGEF4Q8WZA2 1011 aa13.5□□□□□ -0.25
DDX56-203ENST00000421223 RBM25P49756 843 aaKnown RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 LRRCC1Q9C099 1032 aa13.5□□□□□ -0.25
DDX56-203ENST00000421223 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 KIF24Q5T7B8 1368 aa13.5□□□□□ -0.25
DDX56-203ENST00000421223 NBPF7P0C2Y1 421 aaPredicted RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 OS9Q13438 667 aaPredicted RBP13.5□□□□□ -0.25
DDX56-203ENST00000421223 NUTM1Q86Y26 1132 aa13.5□□□□□ -0.25
DDX56-203ENST00000421223 RNMTO43148 476 aaKnown RBP13.49□□□□□ -0.25
DDX56-203ENST00000421223 PIP4K2AP48426 406 aaPredicted RBP13.49□□□□□ -0.25
DDX56-203ENST00000421223 CHMP5Q9NZZ3 219 aa13.49□□□□□ -0.25
DDX56-203ENST00000421223 SRGAP3O43295 1099 aa13.49□□□□□ -0.25
DDX56-203ENST00000421223 PDE1AP54750 535 aa13.49□□□□□ -0.25
DDX56-203ENST00000421223 RGPD1P0DJD0 1748 aa13.49□□□□□ -0.25
DDX56-203ENST00000421223 FMN2Q9NZ56 1722 aa13.49□□□□□ -0.25
DDX56-203ENST00000421223 PROSER3Q2NL68 480 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 PPP1R42Q7Z4L9 355 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 MYL6BP14649 208 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 ATP8B2P98198 1209 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 C9orf78Q9NZ63 289 aaPredicted RBP13.48□□□□□ -0.25
DDX56-203ENST00000421223 AMOTQ4VCS5 1084 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 DNAAF4Q8WXU2 420 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 KIF2CQ99661 725 aa13.48□□□□□ -0.25
DDX56-203ENST00000421223 NOL8Q76FK4 1167 aaKnown RBP13.47□□□□□ -0.25
DDX56-203ENST00000421223 TMEM94Q12767 1356 aa13.46□□□□□ -0.25
DDX56-203ENST00000421223 CWF19L2Q2TBE0 894 aaKnown RBP13.46□□□□□ -0.25
DDX56-203ENST00000421223 MAP3K2Q9Y2U5 619 aa13.46□□□□□ -0.25
DDX56-203ENST00000421223 MX1P20591 662 aa13.46□□□□□ -0.26
DDX56-203ENST00000421223 NFATC2IPQ8NCF5 419 aa13.46□□□□□ -0.26
DDX56-203ENST00000421223 BRPF3Q9ULD4 1205 aa13.45□□□□□ -0.26
DDX56-203ENST00000421223 NWD1Q149M9 1564 aa13.45□□□□□ -0.26
DDX56-203ENST00000421223 CHD2O14647 1828 aaKnown RBP13.45□□□□□ -0.26
DDX56-203ENST00000421223 JARID2Q92833 1246 aaPredicted RBP13.45□□□□□ -0.26
DDX56-203ENST00000421223 USP26Q9BXU7 913 aa13.44□□□□□ -0.26
DDX56-203ENST00000421223 ANO2Q9NQ90 1003 aa13.44□□□□□ -0.26
DDX56-203ENST00000421223 DBF4Q9UBU7 674 aaPredicted RBP13.44□□□□□ -0.26
DDX56-203ENST00000421223 K7ELQ4 463 aaPredicted RBP13.44□□□□□ -0.26
DDX56-203ENST00000421223 TATP17735 454 aaPredicted RBP13.44□□□□□ -0.26
DDX56-203ENST00000421223 MCM4P33991 863 aa13.44□□□□□ -0.26
DDX56-203ENST00000421223 GIGYF1O75420 1035 aaPredicted RBP13.43□□□□□ -0.26
DDX56-203ENST00000421223 BABAM1Q9NWV8 329 aa13.43□□□□□ -0.26
DDX56-203ENST00000421223 CEMIPQ8WUJ3 1361 aa13.43□□□□□ -0.26
DDX56-203ENST00000421223 ERBB3P21860 1342 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 ERC2O15083 957 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 UNC5CLQ8IV45 518 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 PA2G4Q9UQ80 394 aaKnown RBP13.42□□□□□ -0.26
DDX56-203ENST00000421223 C1orf167Q5SNV9 1468 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 REC8O95072 547 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 BEND3Q5T5X7 828 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 FOXD4L5Q5VV16 416 aaPredicted RBP13.42□□□□□ -0.26
DDX56-203ENST00000421223 RIC3Q7Z5B4 369 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 FOXD4L4Q8WXT5 416 aaPredicted RBP13.42□□□□□ -0.26
DDX56-203ENST00000421223 PXDNQ92626 1479 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 SNX21Q969T3 373 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 LTN1O94822 1766 aa13.42□□□□□ -0.26
DDX56-203ENST00000421223 SIL1Q9H173 461 aa13.41□□□□□ -0.26
DDX56-203ENST00000421223 NFAT5O94916 1531 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms