RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 LIG1P18858 919 aa14.08□□□□□ -0.16
UBR4-205ENST00000417040 CASKIN1Q8WXD9 1431 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 IGSF3O75054 1194 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 GJB2P29033 226 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 ATAD2BQ9ULI0 1458 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 KIAA1107Q9UPP5 1409 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 MAP2K1Q02750 393 aaPredicted RBP14.07□□□□□ -0.16
UBR4-205ENST00000417040 JAKMIP3Q5VZ66 844 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 CEP135Q66GS9 1140 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 TAF4BQ92750 862 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 LUC7LQ9NQ29 371 aaKnown RBP14.07□□□□□ -0.16
UBR4-205ENST00000417040 ANO10Q9NW15 660 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 BTBD11A6QL63 1104 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 CCDC178Q5BJE1 867 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 GIMAP6Q6P9H5 292 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 ZSCAN12O43309 604 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 TBC1D9Q6ZT07 1266 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 CALCOCO1Q9P1Z2 691 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 SPG7Q9UQ90 795 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 XRCC6P12956 609 aaKnown RBP eCLIP14.07□□□□□ -0.16
UBR4-205ENST00000417040 DYDC1Q8WWB3 177 aa14.07□□□□□ -0.16
UBR4-205ENST00000417040 NSD3Q9BZ95 1437 aa14.06□□□□□ -0.16
UBR4-205ENST00000417040 STRN4Q9NRL3 753 aa14.06□□□□□ -0.16
UBR4-205ENST00000417040 NKTRP30414 1462 aaKnown RBP14.06□□□□□ -0.16
UBR4-205ENST00000417040 SCAPERQ9BY12 1400 aa14.06□□□□□ -0.16
UBR4-205ENST00000417040 RAB11FIP4Q86YS3 637 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 CABP4P57796 275 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 NUP88Q99567 741 aaPredicted RBP14.05□□□□□ -0.16
UBR4-205ENST00000417040 NACAP1Q9BZK3 213 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.05□□□□□ -0.164e-7■■■□□ 16.5
UBR4-205ENST00000417040 V9GYY5 206 aaPredicted RBP14.05□□□□□ -0.16
UBR4-205ENST00000417040 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 IDH1O75874 414 aaKnown RBP14.05□□□□□ -0.16
UBR4-205ENST00000417040 CCDC57Q2TAC2 916 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 CDKL5O76039 1030 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 SOGA3Q5TF21 947 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 UBAC1Q9BSL1 405 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 USP5P45974 858 aa14.05□□□□□ -0.16
UBR4-205ENST00000417040 CCDC8Q9H0W5 538 aaPredicted RBP14.05□□□□□ -0.16
UBR4-205ENST00000417040 GBP2P32456 591 aaPredicted RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 RPAP2Q8IXW5 612 aaPredicted RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 HCLS1P14317 486 aaPredicted RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 ZNF530Q6P9A1 599 aaPredicted RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 SNW1Q13573 536 aaKnown RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 SPA17Q15506 151 aa14.04□□□□□ -0.16
UBR4-205ENST00000417040 CCDC144CPQ8IYA2 1237 aa14.04□□□□□ -0.16
UBR4-205ENST00000417040 FSIP1Q8NA03 581 aa14.04□□□□□ -0.16
UBR4-205ENST00000417040 ZNF397Q8NF99 534 aaPredicted RBP14.04□□□□□ -0.16
UBR4-205ENST00000417040 IMMTQ16891 758 aaKnown RBP14.03□□□□□ -0.16
UBR4-205ENST00000417040 DYNC1I1O14576 645 aa14.03□□□□□ -0.16
UBR4-205ENST00000417040 ATP2C2O75185 946 aa14.03□□□□□ -0.16
UBR4-205ENST00000417040 MATR3P43243 847 aaKnown RBP eCLIP14.03□□□□□ -0.169e-6■■■■□ 21.7
UBR4-205ENST00000417040 HSP90AA4PQ58FG1 418 aa14.03□□□□□ -0.16
UBR4-205ENST00000417040 DUSP27Q5VZP5 1158 aa14.03□□□□□ -0.16
UBR4-205ENST00000417040 ANKRD30BQ9BXX2 1392 aa14.03□□□□□ -0.16
UBR4-205ENST00000417040 RNF216Q9NWF9 866 aaPredicted RBP14.03□□□□□ -0.16
UBR4-205ENST00000417040 KRT32Q14532 448 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 NFE2L2Q16236 605 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 FAM107BQ9H098 131 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 RAB11FIP3O75154 756 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 CTR9Q6PD62 1173 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 GBP3Q9H0R5 595 aa14.02□□□□□ -0.16
UBR4-205ENST00000417040 ATF3P18847 181 aa14.02□□□□□ -0.17
UBR4-205ENST00000417040 CYB5RLQ6IPT4 315 aa14.02□□□□□ -0.17
UBR4-205ENST00000417040 CNPY2Q9Y2B0 182 aa14.02□□□□□ -0.17
UBR4-205ENST00000417040 TXLNBQ8N3L3 684 aa14.02□□□□□ -0.17
UBR4-205ENST00000417040 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.02□□□□□ -0.17
UBR4-205ENST00000417040 IFFO1Q0D2I5 559 aa14.02□□□□□ -0.17
UBR4-205ENST00000417040 KIF2AO00139 706 aaPredicted RBP14.01□□□□□ -0.17
UBR4-205ENST00000417040 TRIM27P14373 513 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 TBC1D32Q96NH3 1257 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 POLR3DP05423 398 aaPredicted RBP14.01□□□□□ -0.17
UBR4-205ENST00000417040 ANKRD18AQ8IVF6 992 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 GNL3LQ9NVN8 582 aaKnown RBP14.01□□□□□ -0.17
UBR4-205ENST00000417040 UBE4AQ14139 1066 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 PAF1Q8N7H5 531 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 C8orf76Q96K31 380 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 STX6O43752 255 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 LUZP1Q86V48 1076 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 LIMCH1Q9UPQ0 1083 aa14.01□□□□□ -0.17
UBR4-205ENST00000417040 MAP9Q49MG5 647 aa14□□□□□ -0.17
UBR4-205ENST00000417040 CNNM3Q8NE01 707 aa14□□□□□ -0.17
UBR4-205ENST00000417040 INCENPQ9NQS7 918 aa14□□□□□ -0.17
UBR4-205ENST00000417040 LRSAM1Q6UWE0 723 aa14□□□□□ -0.17
UBR4-205ENST00000417040 SCAND2PQ9GZW5 306 aaPredicted RBP14□□□□□ -0.17
UBR4-205ENST00000417040 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14□□□□□ -0.17
UBR4-205ENST00000417040 CTNNA3Q9UI47 895 aa14□□□□□ -0.17
UBR4-205ENST00000417040 NOLC1Q14978 699 aaKnown RBP eCLIP14□□□□□ -0.17
UBR4-205ENST00000417040 MPHOSPH8Q99549 860 aa14□□□□□ -0.17
UBR4-205ENST00000417040 MINDY4BA8MYZ0 360 aa14□□□□□ -0.17
UBR4-205ENST00000417040 ZSCAN25Q6NSZ9 544 aa14□□□□□ -0.17
UBR4-205ENST00000417040 AIDAQ96BJ3 306 aa14□□□□□ -0.17
UBR4-205ENST00000417040 LRP2BPQ9P2M1 347 aa14□□□□□ -0.17
UBR4-205ENST00000417040 CEP131Q9UPN4 1083 aa14□□□□□ -0.17
UBR4-205ENST00000417040 SMARCC1Q92922 1105 aaPredicted RBP13.99□□□□□ -0.17
UBR4-205ENST00000417040 KIF1BPQ96EK5 621 aa13.99□□□□□ -0.17
UBR4-205ENST00000417040 LRPPRCP42704 1394 aaKnown RBP13.99□□□□□ -0.17
UBR4-205ENST00000417040 TATP17735 454 aaPredicted RBP13.99□□□□□ -0.17
UBR4-205ENST00000417040 CACNA2D4Q7Z3S7 1137 aa13.99□□□□□ -0.17
UBR4-205ENST00000417040 USHBP1Q8N6Y0 703 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms