RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KAT6BQ8WYB5 2073 aa18.99■□□□□ 0.63
USP4-203ENST00000415188 ZCRB1Q8TBF4 217 aaKnown RBP18.99■□□□□ 0.63
USP4-203ENST00000415188 PLEKHF1Q96S99 279 aa18.99■□□□□ 0.63
USP4-203ENST00000415188 CANXP27824 592 aaKnown RBP18.98■□□□□ 0.63
USP4-203ENST00000415188 SLC15A2Q16348 729 aa18.98■□□□□ 0.63
USP4-203ENST00000415188 RRP7AQ9Y3A4 280 aaKnown RBP18.98■□□□□ 0.63
USP4-203ENST00000415188 MAPK8IP3Q9UPT6 1336 aa18.98■□□□□ 0.63
USP4-203ENST00000415188 SHANK3Q9BYB0 1731 aa18.98■□□□□ 0.63
USP4-203ENST00000415188 ZBTB7AO95365 584 aa18.97■□□□□ 0.63
USP4-203ENST00000415188 NEUROD2Q15784 382 aa18.97■□□□□ 0.63
USP4-203ENST00000415188 DIAPH1O60610 1272 aaKnown RBP18.97■□□□□ 0.63
USP4-203ENST00000415188 SYTL4Q96C24 671 aaPredicted RBP18.97■□□□□ 0.63
USP4-203ENST00000415188 PPP1R1BQ9UD71 204 aaPredicted RBP18.97■□□□□ 0.63
USP4-203ENST00000415188 PRIM1P49642 420 aaKnown RBP18.96■□□□□ 0.63
USP4-203ENST00000415188 KIF24Q5T7B8 1368 aa18.96■□□□□ 0.63
USP4-203ENST00000415188 LRRC4BQ9NT99 713 aa18.96■□□□□ 0.63
USP4-203ENST00000415188 ZBTB47Q9UFB7 747 aaPredicted RBP18.96■□□□□ 0.63
USP4-203ENST00000415188 VIRMAQ69YN4 1812 aaKnown RBP18.95■□□□□ 0.62
USP4-203ENST00000415188 PPM1GO15355 546 aaPredicted RBP18.95■□□□□ 0.62
USP4-203ENST00000415188 TMPOP42166 694 aaKnown RBP18.95■□□□□ 0.62
USP4-203ENST00000415188 RAPGEF4Q8WZA2 1011 aa18.95■□□□□ 0.62
USP4-203ENST00000415188 CLUAP1Q96AJ1 413 aa18.95■□□□□ 0.62
USP4-203ENST00000415188 MAP2P11137 1827 aaKnown RBP18.94■□□□□ 0.62
USP4-203ENST00000415188 DOT1LQ8TEK3 1739 aa18.94■□□□□ 0.62
USP4-203ENST00000415188 PAPPAQ13219 1627 aa18.94■□□□□ 0.62
USP4-203ENST00000415188 U2SURPO15042 1029 aaKnown RBP18.94■□□□□ 0.62
USP4-203ENST00000415188 ATF5Q9Y2D1 282 aaPredicted RBP18.94■□□□□ 0.62
USP4-203ENST00000415188 TATP17735 454 aaPredicted RBP18.93■□□□□ 0.62
USP4-203ENST00000415188 ZNF827Q17R98 1081 aa18.93■□□□□ 0.62
USP4-203ENST00000415188 FCHSD2O94868 740 aa18.92■□□□□ 0.62
USP4-203ENST00000415188 KCNQ4P56696 695 aa18.91■□□□□ 0.62
USP4-203ENST00000415188 FAM161AQ3B820 660 aa18.91■□□□□ 0.62
USP4-203ENST00000415188 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
USP4-203ENST00000415188 PTGER2P43116 358 aa18.9■□□□□ 0.62
USP4-203ENST00000415188 POLKQ9UBT6 870 aa18.9■□□□□ 0.62
USP4-203ENST00000415188 SLC27A3Q5K4L6 730 aa18.89■□□□□ 0.61
USP4-203ENST00000415188 TRIM35Q9UPQ4 493 aa18.89■□□□□ 0.61
USP4-203ENST00000415188 NEFMP07197 916 aa18.88■□□□□ 0.61
USP4-203ENST00000415188 PANK1Q8TE04 598 aa18.88■□□□□ 0.61
USP4-203ENST00000415188 AKT1S1Q96B36 256 aa18.88■□□□□ 0.61
USP4-203ENST00000415188 COG6Q9Y2V7 657 aa18.88■□□□□ 0.61
USP4-203ENST00000415188 PCDH11XQ9BZA7 1347 aa18.87■□□□□ 0.61
USP4-203ENST00000415188 PCDH11YQ9BZA8 1340 aa18.87■□□□□ 0.61
USP4-203ENST00000415188 NCAPD2Q15021 1401 aa18.87■□□□□ 0.61
USP4-203ENST00000415188 CYP27B1O15528 508 aa18.87■□□□□ 0.61
USP4-203ENST00000415188 FRAT1Q92837 279 aaPredicted RBP18.87■□□□□ 0.61
USP4-203ENST00000415188 MTFR1LQ9H019 292 aa18.87■□□□□ 0.61
USP4-203ENST00000415188 ZKSCAN2Q63HK3 967 aa18.86■□□□□ 0.61
USP4-203ENST00000415188 EYA1Q99502 592 aa18.86■□□□□ 0.61
USP4-203ENST00000415188 CALD1Q05682 793 aaKnown RBP18.85■□□□□ 0.61
USP4-203ENST00000415188 ZNF428Q96B54 188 aa18.85■□□□□ 0.61
USP4-203ENST00000415188 RIPK4P57078 832 aa18.84■□□□□ 0.61
USP4-203ENST00000415188 SGIP1Q9BQI5 828 aa18.84■□□□□ 0.61
USP4-203ENST00000415188 RSPH6AQ9H0K4 717 aa18.84■□□□□ 0.61
USP4-203ENST00000415188 LY75O60449 1722 aa18.84■□□□□ 0.61
USP4-203ENST00000415188 NPM2Q86SE8 214 aaKnown RBP18.84■□□□□ 0.61
USP4-203ENST00000415188 CCNL1Q9UK58 526 aaPredicted RBP18.84■□□□□ 0.61
USP4-203ENST00000415188 PKD1L3Q7Z443 1732 aa18.83■□□□□ 0.6
USP4-203ENST00000415188 IGHDP01880 384 aa18.83■□□□□ 0.6
USP4-203ENST00000415188 EIF4A2Q14240 407 aaKnown RBP18.83■□□□□ 0.6
USP4-203ENST00000415188 MVPQ14764 893 aaKnown RBP18.83■□□□□ 0.6
USP4-203ENST00000415188 C8orf34Q49A92 452 aa18.83■□□□□ 0.6
USP4-203ENST00000415188 PNPLA7Q6ZV29 1317 aa18.82■□□□□ 0.6
USP4-203ENST00000415188 EXOSC9Q06265 439 aaKnown RBP18.82■□□□□ 0.6
USP4-203ENST00000415188 MPRIPQ6WCQ1 1025 aa18.82■□□□□ 0.6
USP4-203ENST00000415188 DZIP1LQ8IYY4 767 aaKnown RBP18.82■□□□□ 0.6
USP4-203ENST00000415188 TOGARAM1Q9Y4F4 1720 aa18.82■□□□□ 0.6
USP4-203ENST00000415188 NFE2L2Q16236 605 aa18.81■□□□□ 0.6
USP4-203ENST00000415188 ALDH1L2Q3SY69 923 aa18.81■□□□□ 0.6
USP4-203ENST00000415188 FHDC1Q9C0D6 1143 aaPredicted RBP18.81■□□□□ 0.6
USP4-203ENST00000415188 RWDD1Q9H446 243 aaPredicted RBP18.81■□□□□ 0.6
USP4-203ENST00000415188 TFCP2L1Q9NZI6 479 aa18.81■□□□□ 0.6
USP4-203ENST00000415188 KIF16BQ96L93 1317 aa18.81■□□□□ 0.6
USP4-203ENST00000415188 RLBP1P12271 317 aa18.8■□□□□ 0.6
USP4-203ENST00000415188 SKAP1Q86WV1 359 aa18.8■□□□□ 0.6
USP4-203ENST00000415188 FTSJ3Q8IY81 847 aaKnown RBP18.8■□□□□ 0.6
USP4-203ENST00000415188 SMC4Q9NTJ3 1288 aa18.8■□□□□ 0.6
USP4-203ENST00000415188 SPG7Q9UQ90 795 aa18.8■□□□□ 0.6
USP4-203ENST00000415188 TUBGCP6Q96RT7 1819 aa18.8■□□□□ 0.6
USP4-203ENST00000415188 PRKAR2BP31323 418 aa18.79■□□□□ 0.6
USP4-203ENST00000415188 IL13P35225 146 aa18.79■□□□□ 0.6
USP4-203ENST00000415188 BRPF1P55201 1214 aaPredicted RBP18.79■□□□□ 0.6
USP4-203ENST00000415188 LMOD3Q0VAK6 560 aa18.79■□□□□ 0.6
USP4-203ENST00000415188 TSR2Q969E8 191 aaKnown RBP18.79■□□□□ 0.6
USP4-203ENST00000415188 IPO8O15397 1037 aaKnown RBP18.78■□□□□ 0.6
USP4-203ENST00000415188 RGS3P49796 1198 aa18.78■□□□□ 0.6
USP4-203ENST00000415188 NKX1-1Q15270 411 aaPredicted RBP18.78■□□□□ 0.6
USP4-203ENST00000415188 ARXQ96QS3 562 aa18.78■□□□□ 0.6
USP4-203ENST00000415188 PALLDQ8WX93 1383 aa18.78■□□□□ 0.6
USP4-203ENST00000415188 QSER1Q2KHR3 1735 aa18.78■□□□□ 0.6
USP4-203ENST00000415188 SYT17Q9BSW7 474 aa18.77■□□□□ 0.6
USP4-203ENST00000415188 DDX19BQ9UMR2 479 aa18.77■□□□□ 0.6
USP4-203ENST00000415188 ATF7IPQ6VMQ6 1270 aa18.77■□□□□ 0.59
USP4-203ENST00000415188 PIGBQ92521 554 aa18.77■□□□□ 0.59
USP4-203ENST00000415188 BCL2L13Q9BXK5 485 aa18.77■□□□□ 0.59
USP4-203ENST00000415188 IGSF1Q8N6C5 1336 aa18.77■□□□□ 0.59
USP4-203ENST00000415188 DCAF8L1A6NGE4 600 aa18.76■□□□□ 0.59
USP4-203ENST00000415188 SLC16A10Q8TF71 515 aa18.76■□□□□ 0.59
USP4-203ENST00000415188 SSH1Q8WYL5 1049 aa18.76■□□□□ 0.59
USP4-203ENST00000415188 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.76■□□□□ 0.593e-7■□□□□ 11.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms