RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PCDH11YQ9BZA8 1340 aa18.48■□□□□ 0.55
SKA1-202ENST00000398452 GNAI1P63096 354 aa18.47■□□□□ 0.55
SKA1-202ENST00000398452 EN1Q05925 392 aaPredicted RBP18.47■□□□□ 0.55
SKA1-202ENST00000398452 LAS1LQ9Y4W2 734 aaKnown RBP18.47■□□□□ 0.55
SKA1-202ENST00000398452 MEGF6O75095 1541 aa18.47■□□□□ 0.55
SKA1-202ENST00000398452 PSDA5PKW4 1024 aaPredicted RBP18.46■□□□□ 0.55
SKA1-202ENST00000398452 EXOC5O00471 708 aa18.46■□□□□ 0.55
SKA1-202ENST00000398452 OVOS2A0A0G2JMS6 1433 aa18.46■□□□□ 0.55
SKA1-202ENST00000398452 CDCA7LQ96GN5 454 aa18.45■□□□□ 0.54
SKA1-202ENST00000398452 PARP4Q9UKK3 1724 aaKnown RBP18.45■□□□□ 0.54
SKA1-202ENST00000398452 TRIM37O94972 964 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 SLFN5Q08AF3 891 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 TEFQ10587 303 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 DCTN1Q14203 1278 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 BARGINQ6ZT62 677 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 MCM10Q7L590 875 aa18.44■□□□□ 0.54
SKA1-202ENST00000398452 PHKG2P15735 406 aa18.43■□□□□ 0.54
SKA1-202ENST00000398452 MKRN4PQ13434 485 aaPredicted RBP18.43■□□□□ 0.54
SKA1-202ENST00000398452 DDX54Q8TDD1 881 aaKnown RBP18.43■□□□□ 0.54
SKA1-202ENST00000398452 IFT57Q9NWB7 429 aa18.43■□□□□ 0.54
SKA1-202ENST00000398452 DDB1Q16531 1140 aa18.42■□□□□ 0.54
SKA1-202ENST00000398452 MPRIPQ6WCQ1 1025 aa18.42■□□□□ 0.54
SKA1-202ENST00000398452 THUMPD2Q9BTF0 503 aaKnown RBP18.42■□□□□ 0.54
SKA1-202ENST00000398452 THSD7AQ9UPZ6 1657 aa18.41■□□□□ 0.54
SKA1-202ENST00000398452 PITPNM1O00562 1244 aa18.41■□□□□ 0.54
SKA1-202ENST00000398452 DCAF5Q96JK2 942 aa18.41■□□□□ 0.54
SKA1-202ENST00000398452 CFAP44Q96MT7 982 aa18.41■□□□□ 0.54
SKA1-202ENST00000398452 SRCAPQ6ZRS2 3230 aa18.4■□□□□ 0.54
SKA1-202ENST00000398452 RNMTO43148 476 aaKnown RBP18.4■□□□□ 0.54
SKA1-202ENST00000398452 EZH2Q15910 746 aaKnown RBP18.39■□□□□ 0.53
SKA1-202ENST00000398452 DUSP27Q5VZP5 1158 aa18.39■□□□□ 0.53
SKA1-202ENST00000398452 FAM196AQ6ZSG2 479 aa18.39■□□□□ 0.53
SKA1-202ENST00000398452 DLG5Q8TDM6 1919 aa18.39■□□□□ 0.53
SKA1-202ENST00000398452 APBA3O96018 575 aa18.38■□□□□ 0.53
SKA1-202ENST00000398452 TAF7Q15545 349 aaPredicted RBP18.38■□□□□ 0.53
SKA1-202ENST00000398452 IL17REQ8NFR9 667 aa18.38■□□□□ 0.53
SKA1-202ENST00000398452 BABAM1Q9NWV8 329 aa18.38■□□□□ 0.53
SKA1-202ENST00000398452 TSPYL4Q9UJ04 414 aa18.38■□□□□ 0.53
SKA1-202ENST00000398452 DISP2A7MBM2 1401 aa18.38■□□□□ 0.53
SKA1-202ENST00000398452 CYP27B1O15528 508 aa18.37■□□□□ 0.53
SKA1-202ENST00000398452 PIP4P2Q8N4L2 257 aa18.37■□□□□ 0.53
SKA1-202ENST00000398452 CABP4P57796 275 aa18.36■□□□□ 0.53
SKA1-202ENST00000398452 PKD1L3Q7Z443 1732 aa18.36■□□□□ 0.53
SKA1-202ENST00000398452 LGR6Q9HBX8 967 aa18.36■□□□□ 0.53
SKA1-202ENST00000398452 FANCIQ9NVI1 1328 aa18.36■□□□□ 0.53
SKA1-202ENST00000398452 TNS2Q63HR2 1409 aa18.35■□□□□ 0.53
SKA1-202ENST00000398452 R3HDM1Q15032 1099 aaKnown RBP18.35■□□□□ 0.53
SKA1-202ENST00000398452 TRMT2AQ8IZ69 625 aaKnown RBP18.35■□□□□ 0.53
SKA1-202ENST00000398452 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
SKA1-202ENST00000398452 CEMIPQ8WUJ3 1361 aa18.34■□□□□ 0.53
SKA1-202ENST00000398452 BTBD11A6QL63 1104 aa18.34■□□□□ 0.53
SKA1-202ENST00000398452 CHL1O00533 1208 aa18.34■□□□□ 0.53
SKA1-202ENST00000398452 CT47B1P0C2W7 299 aaPredicted RBP18.34■□□□□ 0.53
SKA1-202ENST00000398452 MBIPQ9NS73 344 aa18.34■□□□□ 0.53
SKA1-202ENST00000398452 ERVV-2B6SEH9 535 aa18.33■□□□□ 0.52
SKA1-202ENST00000398452 ZNF853P0CG23 659 aa18.33■□□□□ 0.52
SKA1-202ENST00000398452 NKX1-1Q15270 411 aaPredicted RBP18.33■□□□□ 0.52
SKA1-202ENST00000398452 SLC52A2Q9HAB3 445 aa18.32■□□□□ 0.52
SKA1-202ENST00000398452 RCAN3Q9UKA8 241 aa18.32■□□□□ 0.52
SKA1-202ENST00000398452 FXR2P51116 673 aaKnown RBP eCLIP18.31■□□□□ 0.52
SKA1-202ENST00000398452 EXOSC9Q06265 439 aaKnown RBP18.31■□□□□ 0.52
SKA1-202ENST00000398452 TTC5Q8N0Z6 440 aa18.31■□□□□ 0.52
SKA1-202ENST00000398452 CAMKK2Q96RR4 588 aa18.31■□□□□ 0.52
SKA1-202ENST00000398452 CHMP4AQ9BY43 222 aa18.31■□□□□ 0.52
SKA1-202ENST00000398452 WNK3Q9BYP7 1800 aa18.3■□□□□ 0.52
SKA1-202ENST00000398452 TNS1Q9HBL0 1735 aaKnown RBP18.3■□□□□ 0.52
SKA1-202ENST00000398452 NEFLP07196 543 aa18.3■□□□□ 0.52
SKA1-202ENST00000398452 TMOD3Q9NYL9 352 aa18.3■□□□□ 0.52
SKA1-202ENST00000398452 MIS18AQ9NYP9 233 aa18.3■□□□□ 0.52
SKA1-202ENST00000398452 NFATC2IPQ8NCF5 419 aa18.29■□□□□ 0.52
SKA1-202ENST00000398452 KDM6AO15550 1401 aaPredicted RBP18.29■□□□□ 0.52
SKA1-202ENST00000398452 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.28■□□□□ 0.52
SKA1-202ENST00000398452 ZNF428Q96B54 188 aa18.28■□□□□ 0.52
SKA1-202ENST00000398452 SYTL4Q96C24 671 aaPredicted RBP18.28■□□□□ 0.52
SKA1-202ENST00000398452 LRRC37A3O60309 1634 aa18.27■□□□□ 0.52
SKA1-202ENST00000398452 TWISTNBQ3B726 338 aaPredicted RBP18.27■□□□□ 0.52
SKA1-202ENST00000398452 SUPT16HQ9Y5B9 1047 aaKnown RBP18.26■□□□□ 0.51
SKA1-202ENST00000398452 SOS1Q07889 1333 aaPredicted RBP18.25■□□□□ 0.51
SKA1-202ENST00000398452 ELL2O00472 640 aaPredicted RBP18.25■□□□□ 0.51
SKA1-202ENST00000398452 CANXP27824 592 aaKnown RBP18.25■□□□□ 0.51
SKA1-202ENST00000398452 MARCH10Q8NA82 808 aaPredicted RBP18.25■□□□□ 0.51
SKA1-202ENST00000398452 SCN11AQ9UI33 1791 aa18.25■□□□□ 0.51
SKA1-202ENST00000398452 ZNF790Q6PG37 636 aa18.24■□□□□ 0.51
SKA1-202ENST00000398452 PTF1AQ7RTS3 328 aa18.24■□□□□ 0.51
SKA1-202ENST00000398452 SSUH2Q9Y2M2 353 aa18.24■□□□□ 0.51
SKA1-202ENST00000398452 MRC1P22897 1456 aa18.23■□□□□ 0.51
SKA1-202ENST00000398452 ADAMTS7Q9UKP4 1686 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 NBPF14Q5TI25 921 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 C8orf58Q8NAV2 365 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 FMNL2Q96PY5 1086 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 SMC4Q9NTJ3 1288 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 SHANK3Q9BYB0 1731 aa18.22■□□□□ 0.51
SKA1-202ENST00000398452 HOXB7P09629 217 aa18.21■□□□□ 0.51
SKA1-202ENST00000398452 PRIM1P49642 420 aaKnown RBP18.21■□□□□ 0.51
SKA1-202ENST00000398452 EIF4A1P60842 406 aaKnown RBP18.21■□□□□ 0.51
SKA1-202ENST00000398452 ALDH1L2Q3SY69 923 aa18.21■□□□□ 0.51
SKA1-202ENST00000398452 ACSBG1Q96GR2 724 aa18.21■□□□□ 0.51
SKA1-202ENST00000398452 STK31Q9BXU1 1019 aa18.21■□□□□ 0.51
SKA1-202ENST00000398452 VAMP4O75379 141 aa18.2■□□□□ 0.5
SKA1-202ENST00000398452 RARSP54136 660 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms