RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 COL23A1Q86Y22 540 aaPredicted RBP18.72■□□□□ 0.59
SEC13-204ENST00000397099 AK7Q96M32 723 aa18.72■□□□□ 0.59
SEC13-204ENST00000397099 C4BP0C0L5 1744 aa18.71■□□□□ 0.59
SEC13-204ENST00000397099 COL24A1Q17RW2 1714 aa18.71■□□□□ 0.59
SEC13-204ENST00000397099 MAP3K5Q99683 1374 aa18.7■□□□□ 0.58
SEC13-204ENST00000397099 KDM6AO15550 1401 aaPredicted RBP18.7■□□□□ 0.58
SEC13-204ENST00000397099 HMOX1P09601 288 aa18.7■□□□□ 0.58
SEC13-204ENST00000397099 ZEB1P37275 1124 aaPredicted RBP18.7■□□□□ 0.58
SEC13-204ENST00000397099 MSL1Q68DK7 614 aa18.7■□□□□ 0.58
SEC13-204ENST00000397099 ATG3Q9NT62 314 aa18.7■□□□□ 0.58
SEC13-204ENST00000397099 U2SURPO15042 1029 aaKnown RBP18.69■□□□□ 0.58
SEC13-204ENST00000397099 PPP2R1AP30153 589 aa18.69■□□□□ 0.58
SEC13-204ENST00000397099 CNGB1Q14028 1251 aaPredicted RBP18.69■□□□□ 0.58
SEC13-204ENST00000397099 ASAP1Q9ULH1 1129 aa18.69■□□□□ 0.58
SEC13-204ENST00000397099 PHF14O94880 888 aa18.68■□□□□ 0.58
SEC13-204ENST00000397099 GPR162Q16538 588 aa18.68■□□□□ 0.58
SEC13-204ENST00000397099 PELP1Q8IZL8 1130 aaKnown RBP18.68■□□□□ 0.58
SEC13-204ENST00000397099 GAS2L2Q8NHY3 880 aa18.68■□□□□ 0.58
SEC13-204ENST00000397099 ATP6V1AP38606 617 aa18.67■□□□□ 0.58
SEC13-204ENST00000397099 VIRMAQ69YN4 1812 aaKnown RBP18.67■□□□□ 0.58
SEC13-204ENST00000397099 SSFA2P28290 1259 aa18.66■□□□□ 0.58
SEC13-204ENST00000397099 UBR3Q6ZT12 1888 aa18.66■□□□□ 0.58
SEC13-204ENST00000397099 ADAMTS7Q9UKP4 1686 aa18.66■□□□□ 0.58
SEC13-204ENST00000397099 NFATC2IPQ8NCF5 419 aa18.65■□□□□ 0.58
SEC13-204ENST00000397099 LINC00116Q8NCU8 138 aa18.65■□□□□ 0.58
SEC13-204ENST00000397099 SLC52A2Q9HAB3 445 aa18.65■□□□□ 0.58
SEC13-204ENST00000397099 MRC1P22897 1456 aa18.65■□□□□ 0.58
SEC13-204ENST00000397099 MTHFSDQ2M296 383 aaKnown RBP18.64■□□□□ 0.57
SEC13-204ENST00000397099 RC3H1Q5TC82 1133 aaKnown RBP18.64■□□□□ 0.57
SEC13-204ENST00000397099 CICQ96RK0 1608 aaPredicted RBP18.63■□□□□ 0.57
SEC13-204ENST00000397099 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.63■□□□□ 0.57
SEC13-204ENST00000397099 RNMTO43148 476 aaKnown RBP18.63■□□□□ 0.57
SEC13-204ENST00000397099 FCHSD2O94868 740 aa18.63■□□□□ 0.57
SEC13-204ENST00000397099 RALBP1Q15311 655 aa18.63■□□□□ 0.57
SEC13-204ENST00000397099 SMIM5Q71RC9 77 aa18.63■□□□□ 0.57
SEC13-204ENST00000397099 NLGN2Q8NFZ4 835 aa18.63■□□□□ 0.57
SEC13-204ENST00000397099 RBM42Q9BTD8 480 aaKnown RBP18.63■□□□□ 0.57
SEC13-204ENST00000397099 GNAT3A8MTJ3 354 aa18.62■□□□□ 0.57
SEC13-204ENST00000397099 GNPATO15228 680 aa18.62■□□□□ 0.57
SEC13-204ENST00000397099 ITPK1Q13572 414 aa18.62■□□□□ 0.57
SEC13-204ENST00000397099 AMIGO3Q86WK7 504 aa18.62■□□□□ 0.57
SEC13-204ENST00000397099 COL5A3P25940 1745 aaPredicted RBP18.62■□□□□ 0.57
SEC13-204ENST00000397099 U2AF1L5P0DN76 240 aaPredicted RBP18.61■□□□□ 0.57
SEC13-204ENST00000397099 ADRA2BP18089 450 aa18.61■□□□□ 0.57
SEC13-204ENST00000397099 U2AF1Q01081 240 aaKnown RBP eCLIP18.61■□□□□ 0.57
SEC13-204ENST00000397099 UTRNP46939 3433 aa18.61■□□□□ 0.57
SEC13-204ENST00000397099 CNTNAP4Q9C0A0 1308 aa18.6■□□□□ 0.57
SEC13-204ENST00000397099 NEFMP07197 916 aa18.6■□□□□ 0.57
SEC13-204ENST00000397099 RSPH6AQ9H0K4 717 aa18.6■□□□□ 0.57
SEC13-204ENST00000397099 PNNQ9H307 717 aaKnown RBP18.6■□□□□ 0.57
SEC13-204ENST00000397099 RTCBQ9Y3I0 505 aaKnown RBP18.6■□□□□ 0.57
SEC13-204ENST00000397099 LGR6Q9HBX8 967 aa18.59■□□□□ 0.57
SEC13-204ENST00000397099 PRKAR2BP31323 418 aa18.58■□□□□ 0.56
SEC13-204ENST00000397099 TEFQ10587 303 aa18.58■□□□□ 0.56
SEC13-204ENST00000397099 PTCD1O75127 700 aaKnown RBP18.57■□□□□ 0.56
SEC13-204ENST00000397099 VSIG10Q8N0Z9 540 aa18.57■□□□□ 0.56
SEC13-204ENST00000397099 HTATSF1O43719 755 aaKnown RBP18.56■□□□□ 0.56
SEC13-204ENST00000397099 TRAPPC3LQ5T215 181 aa18.56■□□□□ 0.56
SEC13-204ENST00000397099 SLC4A9Q96Q91 983 aa18.56■□□□□ 0.56
SEC13-204ENST00000397099 CD2APQ9Y5K6 639 aa18.56■□□□□ 0.56
SEC13-204ENST00000397099 RPS6KA4O75676 772 aa18.55■□□□□ 0.56
SEC13-204ENST00000397099 DDX10Q13206 875 aaKnown RBP18.55■□□□□ 0.56
SEC13-204ENST00000397099 TTC5Q8N0Z6 440 aa18.55■□□□□ 0.56
SEC13-204ENST00000397099 ZNF784Q8NCA9 323 aaPredicted RBP18.55■□□□□ 0.56
SEC13-204ENST00000397099 GOLGB1Q14789 3259 aaKnown RBP18.55■□□□□ 0.56
SEC13-204ENST00000397099 RTF1Q92541 710 aaKnown RBP18.54■□□□□ 0.56
SEC13-204ENST00000397099 SIPA1L3O60292 1781 aaPredicted RBP18.54■□□□□ 0.56
SEC13-204ENST00000397099 UBR2Q8IWV8 1755 aa18.54■□□□□ 0.56
SEC13-204ENST00000397099 TJP1Q07157 1748 aa18.54■□□□□ 0.56
SEC13-204ENST00000397099 CEMIPQ8WUJ3 1361 aa18.54■□□□□ 0.56
SEC13-204ENST00000397099 PHACTR3Q96KR7 559 aa18.53■□□□□ 0.56
SEC13-204ENST00000397099 TEX13AQ9BXU3 409 aaPredicted RBP18.53■□□□□ 0.56
SEC13-204ENST00000397099 MYH14Q7Z406 1995 aaKnown RBP18.53■□□□□ 0.56
SEC13-204ENST00000397099 GRIN3BO60391 1043 aa18.52■□□□□ 0.56
SEC13-204ENST00000397099 YBX3P16989 372 aaKnown RBP eCLIP18.52■□□□□ 0.561e-7■□□□□ 8.2
SEC13-204ENST00000397099 RFC4P35249 363 aa18.52■□□□□ 0.56
SEC13-204ENST00000397099 NLGN1Q8N2Q7 840 aa18.52■□□□□ 0.56
SEC13-204ENST00000397099 IL17REQ8NFR9 667 aa18.52■□□□□ 0.56
SEC13-204ENST00000397099 CHD4Q14839 1912 aa18.52■□□□□ 0.56
SEC13-204ENST00000397099 KCPQ6ZWJ8 1503 aa18.51■□□□□ 0.55
SEC13-204ENST00000397099 CRKLP46109 303 aaKnown RBP18.51■□□□□ 0.55
SEC13-204ENST00000397099 MYBBP1AQ9BQG0 1328 aaKnown RBP18.5■□□□□ 0.55
SEC13-204ENST00000397099 STARD3NLO95772 234 aa18.5■□□□□ 0.55
SEC13-204ENST00000397099 ZNF790Q6PG37 636 aa18.5■□□□□ 0.55
SEC13-204ENST00000397099 MMP10P09238 476 aa18.49■□□□□ 0.55
SEC13-204ENST00000397099 SLC39A6Q13433 755 aa18.49■□□□□ 0.55
SEC13-204ENST00000397099 ARHGEF1Q92888 912 aaKnown RBP18.49■□□□□ 0.55
SEC13-204ENST00000397099 CCDC87Q9NVE4 849 aa18.49■□□□□ 0.55
SEC13-204ENST00000397099 WWC3Q9ULE0 1092 aa18.48■□□□□ 0.55
SEC13-204ENST00000397099 MAPK8IP3Q9UPT6 1336 aa18.48■□□□□ 0.55
SEC13-204ENST00000397099 C4AP0C0L4 1744 aa18.47■□□□□ 0.55
SEC13-204ENST00000397099 CYP19A1P11511 503 aaPredicted RBP18.47■□□□□ 0.55
SEC13-204ENST00000397099 DNAJC10Q8IXB1 793 aa18.47■□□□□ 0.55
SEC13-204ENST00000397099 FMNL2Q96PY5 1086 aa18.47■□□□□ 0.55
SEC13-204ENST00000397099 BTBD11A6QL63 1104 aa18.46■□□□□ 0.55
SEC13-204ENST00000397099 HEG1Q9ULI3 1381 aa18.45■□□□□ 0.54
SEC13-204ENST00000397099 INTS5Q6P9B9 1019 aaKnown RBP18.45■□□□□ 0.54
SEC13-204ENST00000397099 PLEKHF1Q96S99 279 aa18.45■□□□□ 0.54
SEC13-204ENST00000397099 DLG5Q8TDM6 1919 aa18.45■□□□□ 0.54
SEC13-204ENST00000397099 ZPR1O75312 459 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms