RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ERBB3P21860 1342 aa18.76■□□□□ 0.59
CBX3-202ENST00000396386 CCT4P50991 539 aaKnown RBP18.75■□□□□ 0.59
CBX3-202ENST00000396386 SEC24BO95487 1268 aa18.74■□□□□ 0.59
CBX3-202ENST00000396386 C1orf141Q5JVX7 400 aa18.74■□□□□ 0.59
CBX3-202ENST00000396386 AXIN2Q9Y2T1 843 aa18.74■□□□□ 0.59
CBX3-202ENST00000396386 ZC3H6P61129 1189 aaKnown RBP18.73■□□□□ 0.59
CBX3-202ENST00000396386 ANKRD45Q5TZF3 282 aa18.73■□□□□ 0.59
CBX3-202ENST00000396386 ANKRD44Q8N8A2 993 aa18.73■□□□□ 0.59
CBX3-202ENST00000396386 DDX17Q92841 729 aaKnown RBP18.73■□□□□ 0.59
CBX3-202ENST00000396386 TEFQ10587 303 aa18.73■□□□□ 0.59
CBX3-202ENST00000396386 FLIIQ13045 1269 aa18.73■□□□□ 0.59
CBX3-202ENST00000396386 RPAP2Q8IXW5 612 aaPredicted RBP18.73■□□□□ 0.59
CBX3-202ENST00000396386 SCN11AQ9UI33 1791 aa18.73■□□□□ 0.59
CBX3-202ENST00000396386 HOXB7P09629 217 aa18.72■□□□□ 0.59
CBX3-202ENST00000396386 MEIS3Q99687 375 aa18.72■□□□□ 0.59
CBX3-202ENST00000396386 LGR6Q9HBX8 967 aa18.72■□□□□ 0.59
CBX3-202ENST00000396386 DAXXQ9UER7 740 aaPredicted RBP18.72■□□□□ 0.59
CBX3-202ENST00000396386 HDGFL1Q5TGJ6 251 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 SLC4A10Q6U841 1118 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 SPATA31A3Q5VYP0 1347 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 PKD1L3Q7Z443 1732 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 F6X3S4 739 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 FKBP5Q13451 457 aaPredicted RBP18.71■□□□□ 0.59
CBX3-202ENST00000396386 CEP85Q6P2H3 762 aa18.71■□□□□ 0.59
CBX3-202ENST00000396386 ABCA3Q99758 1704 aa18.7■□□□□ 0.58
CBX3-202ENST00000396386 RNMTO43148 476 aaKnown RBP18.7■□□□□ 0.58
CBX3-202ENST00000396386 EIF4A1P60842 406 aaKnown RBP18.7■□□□□ 0.58
CBX3-202ENST00000396386 NECTIN2Q92692 538 aa18.7■□□□□ 0.58
CBX3-202ENST00000396386 CHMP4AQ9BY43 222 aa18.7■□□□□ 0.58
CBX3-202ENST00000396386 PLEKHG2Q9H7P9 1386 aa18.7■□□□□ 0.58
CBX3-202ENST00000396386 MPRIPQ6WCQ1 1025 aa18.69■□□□□ 0.58
CBX3-202ENST00000396386 DCTPP1Q9H773 170 aa18.69■□□□□ 0.58
CBX3-202ENST00000396386 TBC1D32Q96NH3 1257 aa18.69■□□□□ 0.58
CBX3-202ENST00000396386 BTBD11A6QL63 1104 aa18.68■□□□□ 0.58
CBX3-202ENST00000396386 BMP2KLQ5H9B9 411 aa18.68■□□□□ 0.58
CBX3-202ENST00000396386 CPDO75976 1380 aa18.68■□□□□ 0.58
CBX3-202ENST00000396386 HMMRO75330 724 aa18.67■□□□□ 0.58
CBX3-202ENST00000396386 RAPGEF4Q8WZA2 1011 aa18.67■□□□□ 0.58
CBX3-202ENST00000396386 MEGF6O75095 1541 aa18.66■□□□□ 0.58
CBX3-202ENST00000396386 PARP4Q9UKK3 1724 aaKnown RBP18.66■□□□□ 0.58
CBX3-202ENST00000396386 BRINP3Q76B58 766 aa18.66■□□□□ 0.58
CBX3-202ENST00000396386 NLRP2Q9NX02 1062 aa18.66■□□□□ 0.58
CBX3-202ENST00000396386 GNAI3P08754 354 aa18.65■□□□□ 0.58
CBX3-202ENST00000396386 CABLES1Q8TDN4 633 aa18.65■□□□□ 0.58
CBX3-202ENST00000396386 NHSL1Q5SYE7 1610 aa18.64■□□□□ 0.57
CBX3-202ENST00000396386 GNAI2P04899 355 aa18.64■□□□□ 0.57
CBX3-202ENST00000396386 TATP17735 454 aaPredicted RBP18.64■□□□□ 0.57
CBX3-202ENST00000396386 ZNF335Q9H4Z2 1342 aaPredicted RBP18.64■□□□□ 0.57
CBX3-202ENST00000396386 C5P01031 1676 aa18.63■□□□□ 0.57
CBX3-202ENST00000396386 KCNQ3O43525 872 aa18.63■□□□□ 0.57
CBX3-202ENST00000396386 CSB-PGBD3P0DP91 1061 aa18.63■□□□□ 0.57
CBX3-202ENST00000396386 MFAP1P55081 439 aaKnown RBP18.63■□□□□ 0.57
CBX3-202ENST00000396386 MRC1P22897 1456 aa18.63■□□□□ 0.57
CBX3-202ENST00000396386 EIF2S2P20042 333 aaKnown RBP18.63■□□□□ 0.57
CBX3-202ENST00000396386 BECN1Q14457 450 aa18.63■□□□□ 0.57
CBX3-202ENST00000396386 KDM6AO15550 1401 aaPredicted RBP18.62■□□□□ 0.57
CBX3-202ENST00000396386 SLC4A3P48751 1232 aa18.62■□□□□ 0.57
CBX3-202ENST00000396386 CHPF2Q9P2E5 772 aa18.62■□□□□ 0.57
CBX3-202ENST00000396386 SPG7Q9UQ90 795 aa18.62■□□□□ 0.57
CBX3-202ENST00000396386 HEG1Q9ULI3 1381 aa18.61■□□□□ 0.57
CBX3-202ENST00000396386 NBR1Q14596 966 aa18.61■□□□□ 0.57
CBX3-202ENST00000396386 CHRNA2Q15822 529 aa18.61■□□□□ 0.57
CBX3-202ENST00000396386 PHAXQ9H814 394 aaKnown RBP18.61■□□□□ 0.57
CBX3-202ENST00000396386 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.61■□□□□ 0.575e-7■■■□□ 16.3
CBX3-202ENST00000396386 C22orf23Q9BZE7 217 aa18.6■□□□□ 0.57
CBX3-202ENST00000396386 SOS2Q07890 1332 aaPredicted RBP18.6■□□□□ 0.57
CBX3-202ENST00000396386 PLEKHM2Q8IWE5 1019 aa18.59■□□□□ 0.57
CBX3-202ENST00000396386 PHKG2P15735 406 aa18.58■□□□□ 0.57
CBX3-202ENST00000396386 SLAIN2Q9P270 581 aa18.58■□□□□ 0.56
CBX3-202ENST00000396386 DBF4Q9UBU7 674 aaPredicted RBP18.58■□□□□ 0.56
CBX3-202ENST00000396386 GIGYF1O75420 1035 aaPredicted RBP18.57■□□□□ 0.56
CBX3-202ENST00000396386 SRCIN1Q9C0H9 1055 aa18.57■□□□□ 0.56
CBX3-202ENST00000396386 LAMB4A4D0S4 1761 aa18.57■□□□□ 0.56
CBX3-202ENST00000396386 UBTFL1P0CB47 393 aaPredicted RBP18.56■□□□□ 0.56
CBX3-202ENST00000396386 TTC22Q5TAA0 569 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 TUBGCP6Q96RT7 1819 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 CDC45O75419 566 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 RTL5Q5HYW3 569 aaPredicted RBP18.56■□□□□ 0.56
CBX3-202ENST00000396386 IFNL2Q8IZJ0 200 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 DNAAF4Q8WXU2 420 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 SLC52A2Q9HAB3 445 aa18.56■□□□□ 0.56
CBX3-202ENST00000396386 COL5A2P05997 1499 aaPredicted RBP18.55■□□□□ 0.56
CBX3-202ENST00000396386 ADCY9O60503 1353 aa18.55■□□□□ 0.56
CBX3-202ENST00000396386 GSPT1P15170 499 aaKnown RBP18.55■□□□□ 0.56
CBX3-202ENST00000396386 LRRFIP2Q9Y608 721 aaKnown RBP18.55■□□□□ 0.56
CBX3-202ENST00000396386 APBB1O00213 710 aa18.54■□□□□ 0.56
CBX3-202ENST00000396386 ATP8B2P98198 1209 aa18.54■□□□□ 0.56
CBX3-202ENST00000396386 TBC1D9Q6ZT07 1266 aa18.54■□□□□ 0.56
CBX3-202ENST00000396386 USP44Q9H0E7 712 aa18.54■□□□□ 0.56
CBX3-202ENST00000396386 PRDM11Q9NQV5 511 aa18.54■□□□□ 0.56
CBX3-202ENST00000396386 SMARCA5O60264 1052 aaPredicted RBP18.54■□□□□ 0.56
CBX3-202ENST00000396386 EIF5BO60841 1220 aaKnown RBP18.54■□□□□ 0.56
CBX3-202ENST00000396386 WDR17Q8IZU2 1322 aa18.53■□□□□ 0.56
CBX3-202ENST00000396386 HSP90AB1P08238 724 aaKnown RBP18.53■□□□□ 0.56
CBX3-202ENST00000396386 C16orf71Q8IYS4 520 aaPredicted RBP18.53■□□□□ 0.56
CBX3-202ENST00000396386 PI4KAP2A4QPH2 592 aa18.52■□□□□ 0.56
CBX3-202ENST00000396386 ANXA1P04083 346 aa18.52■□□□□ 0.56
CBX3-202ENST00000396386 RBM25P49756 843 aaKnown RBP18.52■□□□□ 0.56
CBX3-202ENST00000396386 BEND3Q5T5X7 828 aa18.52■□□□□ 0.56
CBX3-202ENST00000396386 PI4KAP1Q8N8J0 262 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms