RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 ATP6V1AP38606 617 aa23.43■■□□□ 1.34
UPK3A-202ENST00000396082 AK7Q96M32 723 aa23.43■■□□□ 1.34
UPK3A-202ENST00000396082 SLC16A10Q8TF71 515 aa23.42■■□□□ 1.34
UPK3A-202ENST00000396082 RBM42Q9BTD8 480 aaKnown RBP23.42■■□□□ 1.34
UPK3A-202ENST00000396082 U2AF1L5P0DN76 240 aaPredicted RBP23.41■■□□□ 1.34
UPK3A-202ENST00000396082 U2AF1Q01081 240 aaKnown RBP eCLIP23.41■■□□□ 1.34
UPK3A-202ENST00000396082 NFATC2IPQ8NCF5 419 aa23.41■■□□□ 1.34
UPK3A-202ENST00000396082 PTGER2P43116 358 aa23.4■■□□□ 1.34
UPK3A-202ENST00000396082 GAS2L2Q8NHY3 880 aa23.4■■□□□ 1.34
UPK3A-202ENST00000396082 RNMTO43148 476 aaKnown RBP23.39■■□□□ 1.33
UPK3A-202ENST00000396082 PRKAR2BP31323 418 aa23.39■■□□□ 1.33
UPK3A-202ENST00000396082 COL23A1Q86Y22 540 aaPredicted RBP23.38■■□□□ 1.33
UPK3A-202ENST00000396082 LINC00116Q8NCU8 138 aa23.38■■□□□ 1.33
UPK3A-202ENST00000396082 FLAD1Q8NFF5 587 aa23.38■■□□□ 1.33
UPK3A-202ENST00000396082 LGR6Q9HBX8 967 aa23.38■■□□□ 1.33
UPK3A-202ENST00000396082 POLD1P28340 1107 aa23.37■■□□□ 1.33
UPK3A-202ENST00000396082 ITPK1Q13572 414 aa23.37■■□□□ 1.33
UPK3A-202ENST00000396082 RSPH6AQ9H0K4 717 aa23.37■■□□□ 1.33
UPK3A-202ENST00000396082 SLC52A2Q9HAB3 445 aa23.37■■□□□ 1.33
UPK3A-202ENST00000396082 PHF14O94880 888 aa23.36■■□□□ 1.33
UPK3A-202ENST00000396082 RALBP1Q15311 655 aa23.36■■□□□ 1.33
UPK3A-202ENST00000396082 UBR3Q6ZT12 1888 aa23.36■■□□□ 1.33
UPK3A-202ENST00000396082 MAP3K5Q99683 1374 aa23.36■■□□□ 1.33
UPK3A-202ENST00000396082 MRC1P22897 1456 aa23.36■■□□□ 1.33
UPK3A-202ENST00000396082 ZNF831Q5JPB2 1677 aa23.35■■□□□ 1.33
UPK3A-202ENST00000396082 PTCD1O75127 700 aaKnown RBP23.35■■□□□ 1.33
UPK3A-202ENST00000396082 GNAT3A8MTJ3 354 aa23.34■■□□□ 1.33
UPK3A-202ENST00000396082 GNPATO15228 680 aa23.34■■□□□ 1.33
UPK3A-202ENST00000396082 ARXQ96QS3 562 aa23.34■■□□□ 1.33
UPK3A-202ENST00000396082 SGIP1Q9BQI5 828 aa23.34■■□□□ 1.33
UPK3A-202ENST00000396082 ADAMTS7Q9UKP4 1686 aa23.34■■□□□ 1.33
UPK3A-202ENST00000396082 FCHSD2O94868 740 aa23.33■■□□□ 1.33
UPK3A-202ENST00000396082 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.32■■□□□ 1.32
UPK3A-202ENST00000396082 PHACTR3Q96KR7 559 aa23.32■■□□□ 1.32
UPK3A-202ENST00000396082 SLC4A9Q96Q91 983 aa23.32■■□□□ 1.32
UPK3A-202ENST00000396082 COL5A3P25940 1745 aaPredicted RBP23.32■■□□□ 1.32
UPK3A-202ENST00000396082 NEFMP07197 916 aa23.31■■□□□ 1.32
UPK3A-202ENST00000396082 SSFA2P28290 1259 aa23.31■■□□□ 1.32
UPK3A-202ENST00000396082 MSL1Q68DK7 614 aa23.31■■□□□ 1.32
UPK3A-202ENST00000396082 KLHL34Q8N239 644 aa23.31■■□□□ 1.32
UPK3A-202ENST00000396082 FHDC1Q9C0D6 1143 aaPredicted RBP23.31■■□□□ 1.32
UPK3A-202ENST00000396082 COL24A1Q17RW2 1714 aa23.3■■□□□ 1.32
UPK3A-202ENST00000396082 TEFQ10587 303 aa23.3■■□□□ 1.32
UPK3A-202ENST00000396082 DCAF8L1A6NGE4 600 aa23.29■■□□□ 1.32
UPK3A-202ENST00000396082 SLC39A6Q13433 755 aa23.29■■□□□ 1.32
UPK3A-202ENST00000396082 SMIM5Q71RC9 77 aa23.29■■□□□ 1.32
UPK3A-202ENST00000396082 AMIGO3Q86WK7 504 aa23.29■■□□□ 1.32
UPK3A-202ENST00000396082 RTCBQ9Y3I0 505 aaKnown RBP23.28■■□□□ 1.32
UPK3A-202ENST00000396082 TJP1Q07157 1748 aa23.28■■□□□ 1.32
UPK3A-202ENST00000396082 TTC5Q8N0Z6 440 aa23.27■■□□□ 1.32
UPK3A-202ENST00000396082 IL17REQ8NFR9 667 aa23.27■■□□□ 1.32
UPK3A-202ENST00000396082 RTF1Q92541 710 aaKnown RBP23.27■■□□□ 1.32
UPK3A-202ENST00000396082 MYBBP1AQ9BQG0 1328 aaKnown RBP23.27■■□□□ 1.32
UPK3A-202ENST00000396082 CNTNAP4Q9C0A0 1308 aa23.27■■□□□ 1.32
UPK3A-202ENST00000396082 SYT17Q9BSW7 474 aa23.26■■□□□ 1.31
UPK3A-202ENST00000396082 RC3H1Q5TC82 1133 aaKnown RBP23.25■■□□□ 1.31
UPK3A-202ENST00000396082 CICQ96RK0 1608 aaPredicted RBP23.25■■□□□ 1.31
UPK3A-202ENST00000396082 TRAPPC3LQ5T215 181 aa23.24■■□□□ 1.31
UPK3A-202ENST00000396082 KCPQ6ZWJ8 1503 aa23.23■■□□□ 1.31
UPK3A-202ENST00000396082 SIPA1L3O60292 1781 aaPredicted RBP23.23■■□□□ 1.31
UPK3A-202ENST00000396082 CRKLP46109 303 aaKnown RBP23.23■■□□□ 1.31
UPK3A-202ENST00000396082 PNNQ9H307 717 aaKnown RBP23.23■■□□□ 1.31
UPK3A-202ENST00000396082 MYH14Q7Z406 1995 aaKnown RBP23.23■■□□□ 1.31
UPK3A-202ENST00000396082 UBR2Q8IWV8 1755 aa23.22■■□□□ 1.31
UPK3A-202ENST00000396082 RPS6KA4O75676 772 aa23.22■■□□□ 1.31
UPK3A-202ENST00000396082 DNAJC10Q8IXB1 793 aa23.22■■□□□ 1.31
UPK3A-202ENST00000396082 MAPK8IP3Q9UPT6 1336 aa23.22■■□□□ 1.31
UPK3A-202ENST00000396082 ADRA2BP18089 450 aa23.21■■□□□ 1.31
UPK3A-202ENST00000396082 CEMIPQ8WUJ3 1361 aa23.21■■□□□ 1.31
UPK3A-202ENST00000396082 RFC4P35249 363 aa23.19■■□□□ 1.3
UPK3A-202ENST00000396082 ZNF790Q6PG37 636 aa23.19■■□□□ 1.3
UPK3A-202ENST00000396082 MCM10Q7L590 875 aa23.19■■□□□ 1.3
UPK3A-202ENST00000396082 BTBD11A6QL63 1104 aa23.18■■□□□ 1.3
UPK3A-202ENST00000396082 VSIG10Q8N0Z9 540 aa23.18■■□□□ 1.3
UPK3A-202ENST00000396082 ARHGEF1Q92888 912 aaKnown RBP23.18■■□□□ 1.3
UPK3A-202ENST00000396082 CCDC87Q9NVE4 849 aa23.18■■□□□ 1.3
UPK3A-202ENST00000396082 C4AP0C0L4 1744 aa23.18■■□□□ 1.3
UPK3A-202ENST00000396082 DLG5Q8TDM6 1919 aa23.18■■□□□ 1.3
UPK3A-202ENST00000396082 HTATSF1O43719 755 aaKnown RBP23.17■■□□□ 1.3
UPK3A-202ENST00000396082 DCTN1Q14203 1278 aa23.17■■□□□ 1.3
UPK3A-202ENST00000396082 PRKRIP1Q9H875 184 aaPredicted RBP23.17■■□□□ 1.3
UPK3A-202ENST00000396082 ZNF496Q96IT1 587 aaPredicted RBP23.16■■□□□ 1.3
UPK3A-202ENST00000396082 PLEKHF1Q96S99 279 aa23.16■■□□□ 1.3
UPK3A-202ENST00000396082 CYP19A1P11511 503 aaPredicted RBP23.15■■□□□ 1.3
UPK3A-202ENST00000396082 INTS5Q6P9B9 1019 aaKnown RBP23.15■■□□□ 1.3
UPK3A-202ENST00000396082 FMNL2Q96PY5 1086 aa23.15■■□□□ 1.3
UPK3A-202ENST00000396082 HEG1Q9ULI3 1381 aa23.14■■□□□ 1.3
UPK3A-202ENST00000396082 ZNF316A6NFI3 1004 aaPredicted RBP23.14■■□□□ 1.29
UPK3A-202ENST00000396082 WDR43Q15061 677 aaKnown RBP eCLIP23.14■■□□□ 1.29
UPK3A-202ENST00000396082 NFE2L2Q16236 605 aa23.14■■□□□ 1.29
UPK3A-202ENST00000396082 STARD3NLO95772 234 aa23.13■■□□□ 1.29
UPK3A-202ENST00000396082 NLGN1Q8N2Q7 840 aa23.13■■□□□ 1.29
UPK3A-202ENST00000396082 MMP10P09238 476 aa23.12■■□□□ 1.29
UPK3A-202ENST00000396082 NLGN2Q8NFZ4 835 aa23.12■■□□□ 1.29
UPK3A-202ENST00000396082 TEX13AQ9BXU3 409 aaPredicted RBP23.12■■□□□ 1.29
UPK3A-202ENST00000396082 ZBTB1Q9Y2K1 713 aa23.12■■□□□ 1.29
UPK3A-202ENST00000396082 SOS1Q07889 1333 aaPredicted RBP23.11■■□□□ 1.29
UPK3A-202ENST00000396082 KCNQ3O43525 872 aa23.11■■□□□ 1.29
UPK3A-202ENST00000396082 PELP1Q8IZL8 1130 aaKnown RBP23.11■■□□□ 1.29
UPK3A-202ENST00000396082 GYS1P13807 737 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms