RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 HMOX1P09601 288 aa18.52■□□□□ 0.56
CXCL12-205ENST00000395794 COL23A1Q86Y22 540 aaPredicted RBP18.52■□□□□ 0.56
CXCL12-205ENST00000395794 CFAP53Q96M91 514 aa18.52■□□□□ 0.56
CXCL12-205ENST00000395794 SYT17Q9BSW7 474 aa18.52■□□□□ 0.56
CXCL12-205ENST00000395794 QSER1Q2KHR3 1735 aa18.51■□□□□ 0.55
CXCL12-205ENST00000395794 U2SURPO15042 1029 aaKnown RBP18.5■□□□□ 0.55
CXCL12-205ENST00000395794 AKAP4Q5JQC9 854 aa18.5■□□□□ 0.55
CXCL12-205ENST00000395794 KLHL34Q8N239 644 aa18.5■□□□□ 0.55
CXCL12-205ENST00000395794 CNKSR2Q8WXI2 1034 aa18.5■□□□□ 0.55
CXCL12-205ENST00000395794 RBM42Q9BTD8 480 aaKnown RBP18.5■□□□□ 0.55
CXCL12-205ENST00000395794 C5P01031 1676 aa18.5■□□□□ 0.55
CXCL12-205ENST00000395794 PHF14O94880 888 aa18.48■□□□□ 0.55
CXCL12-205ENST00000395794 NFATC2IPQ8NCF5 419 aa18.48■□□□□ 0.55
CXCL12-205ENST00000395794 LINC00116Q8NCU8 138 aa18.48■□□□□ 0.55
CXCL12-205ENST00000395794 KDM6AO15550 1401 aaPredicted RBP18.48■□□□□ 0.55
CXCL12-205ENST00000395794 SSFA2P28290 1259 aa18.47■□□□□ 0.55
CXCL12-205ENST00000395794 C4BP0C0L5 1744 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 MAP3K5Q99683 1374 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.46■□□□□ 0.55
CXCL12-205ENST00000395794 GNPATO15228 680 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 ITPK1Q13572 414 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 MSL1Q68DK7 614 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 NUDCQ9Y266 331 aa18.46■□□□□ 0.55
CXCL12-205ENST00000395794 RNF216Q9NWF9 866 aaPredicted RBP18.45■□□□□ 0.54
CXCL12-205ENST00000395794 TUBGCP6Q96RT7 1819 aa18.44■□□□□ 0.54
CXCL12-205ENST00000395794 PTCD1O75127 700 aaKnown RBP18.44■□□□□ 0.54
CXCL12-205ENST00000395794 MTHFSDQ2M296 383 aaKnown RBP18.44■□□□□ 0.54
CXCL12-205ENST00000395794 YY1P25490 414 aa18.43■□□□□ 0.54
CXCL12-205ENST00000395794 RTCBQ9Y3I0 505 aaKnown RBP18.43■□□□□ 0.54
CXCL12-205ENST00000395794 TAF1LQ8IZX4 1826 aa18.43■□□□□ 0.54
CXCL12-205ENST00000395794 PPP2R1AP30153 589 aa18.42■□□□□ 0.54
CXCL12-205ENST00000395794 GAS2L2Q8NHY3 880 aa18.42■□□□□ 0.54
CXCL12-205ENST00000395794 SLC52A2Q9HAB3 445 aa18.42■□□□□ 0.54
CXCL12-205ENST00000395794 COL3A1P02461 1466 aaPredicted RBP18.41■□□□□ 0.54
CXCL12-205ENST00000395794 RNMTO43148 476 aaKnown RBP18.41■□□□□ 0.54
CXCL12-205ENST00000395794 GPR162Q16538 588 aa18.41■□□□□ 0.54
CXCL12-205ENST00000395794 TRAPPC3LQ5T215 181 aa18.41■□□□□ 0.54
CXCL12-205ENST00000395794 RC3H1Q5TC82 1133 aaKnown RBP18.41■□□□□ 0.54
CXCL12-205ENST00000395794 LGR6Q9HBX8 967 aa18.41■□□□□ 0.54
CXCL12-205ENST00000395794 SMIM5Q71RC9 77 aa18.4■□□□□ 0.54
CXCL12-205ENST00000395794 AMIGO3Q86WK7 504 aa18.4■□□□□ 0.54
CXCL12-205ENST00000395794 SLC4A9Q96Q91 983 aa18.4■□□□□ 0.54
CXCL12-205ENST00000395794 PELP1Q8IZL8 1130 aaKnown RBP18.39■□□□□ 0.53
CXCL12-205ENST00000395794 CNTNAP4Q9C0A0 1308 aa18.39■□□□□ 0.53
CXCL12-205ENST00000395794 U2AF1L5P0DN76 240 aaPredicted RBP18.38■□□□□ 0.53
CXCL12-205ENST00000395794 U2AF1Q01081 240 aaKnown RBP eCLIP18.38■□□□□ 0.53
CXCL12-205ENST00000395794 COL24A1Q17RW2 1714 aa18.37■□□□□ 0.53
CXCL12-205ENST00000395794 GNAT3A8MTJ3 354 aa18.37■□□□□ 0.53
CXCL12-205ENST00000395794 RPS6KA4O75676 772 aa18.37■□□□□ 0.53
CXCL12-205ENST00000395794 RFC4P35249 363 aa18.37■□□□□ 0.53
CXCL12-205ENST00000395794 C1QBPQ07021 282 aaKnown RBP18.37■□□□□ 0.53
CXCL12-205ENST00000395794 CD2APQ9Y5K6 639 aa18.37■□□□□ 0.53
CXCL12-205ENST00000395794 PRKAR2BP31323 418 aa18.36■□□□□ 0.53
CXCL12-205ENST00000395794 TEFQ10587 303 aa18.36■□□□□ 0.53
CXCL12-205ENST00000395794 ZNF831Q5JPB2 1677 aa18.36■□□□□ 0.53
CXCL12-205ENST00000395794 NLGN2Q8NFZ4 835 aa18.36■□□□□ 0.53
CXCL12-205ENST00000395794 CRKLP46109 303 aaKnown RBP18.35■□□□□ 0.53
CXCL12-205ENST00000395794 TTC5Q8N0Z6 440 aa18.35■□□□□ 0.53
CXCL12-205ENST00000395794 NLGN1Q8N2Q7 840 aa18.35■□□□□ 0.53
CXCL12-205ENST00000395794 UBR3Q6ZT12 1888 aa18.35■□□□□ 0.53
CXCL12-205ENST00000395794 SCN11AQ9UI33 1791 aa18.35■□□□□ 0.53
CXCL12-205ENST00000395794 SLC39A6Q13433 755 aa18.34■□□□□ 0.53
CXCL12-205ENST00000395794 ARHGEF1Q92888 912 aaKnown RBP18.34■□□□□ 0.53
CXCL12-205ENST00000395794 RSPH6AQ9H0K4 717 aa18.34■□□□□ 0.53
CXCL12-205ENST00000395794 FCHSD2O94868 740 aa18.33■□□□□ 0.52
CXCL12-205ENST00000395794 NEFMP07197 916 aa18.33■□□□□ 0.52
CXCL12-205ENST00000395794 MRC1P22897 1456 aa18.33■□□□□ 0.52
CXCL12-205ENST00000395794 MMP10P09238 476 aa18.32■□□□□ 0.52
CXCL12-205ENST00000395794 DNAJC10Q8IXB1 793 aa18.32■□□□□ 0.52
CXCL12-205ENST00000395794 RTF1Q92541 710 aaKnown RBP18.32■□□□□ 0.52
CXCL12-205ENST00000395794 PHACTR3Q96KR7 559 aa18.32■□□□□ 0.52
CXCL12-205ENST00000395794 VSIG10Q8N0Z9 540 aa18.31■□□□□ 0.52
CXCL12-205ENST00000395794 IL17REQ8NFR9 667 aa18.31■□□□□ 0.52
CXCL12-205ENST00000395794 CCDC87Q9NVE4 849 aa18.31■□□□□ 0.52
CXCL12-205ENST00000395794 GRIN3BO60391 1043 aa18.3■□□□□ 0.52
CXCL12-205ENST00000395794 INTS5Q6P9B9 1019 aaKnown RBP18.29■□□□□ 0.52
CXCL12-205ENST00000395794 COL5A3P25940 1745 aaPredicted RBP18.29■□□□□ 0.52
CXCL12-205ENST00000395794 STARD3NLO95772 234 aa18.28■□□□□ 0.52
CXCL12-205ENST00000395794 CYP19A1P11511 503 aaPredicted RBP18.28■□□□□ 0.52
CXCL12-205ENST00000395794 GYS1P13807 737 aa18.28■□□□□ 0.52
CXCL12-205ENST00000395794 DDX10Q13206 875 aaKnown RBP18.28■□□□□ 0.52
CXCL12-205ENST00000395794 PARP3Q9Y6F1 533 aa18.28■□□□□ 0.52
CXCL12-205ENST00000395794 ZPR1O75312 459 aa18.27■□□□□ 0.52
CXCL12-205ENST00000395794 RALBP1Q15311 655 aa18.27■□□□□ 0.52
CXCL12-205ENST00000395794 ZNF790Q6PG37 636 aa18.27■□□□□ 0.52
CXCL12-205ENST00000395794 TEX13AQ9BXU3 409 aaPredicted RBP18.27■□□□□ 0.52
CXCL12-205ENST00000395794 PNNQ9H307 717 aaKnown RBP18.27■□□□□ 0.52
CXCL12-205ENST00000395794 ADAMTS7Q9UKP4 1686 aa18.27■□□□□ 0.52
CXCL12-205ENST00000395794 BTBD11A6QL63 1104 aa18.26■□□□□ 0.51
CXCL12-205ENST00000395794 USP42Q9H9J4 1324 aaKnown RBP18.25■□□□□ 0.51
CXCL12-205ENST00000395794 KCPQ6ZWJ8 1503 aa18.25■□□□□ 0.51
CXCL12-205ENST00000395794 FMNL2Q96PY5 1086 aa18.25■□□□□ 0.51
CXCL12-205ENST00000395794 CEMIPQ8WUJ3 1361 aa18.25■□□□□ 0.51
CXCL12-205ENST00000395794 CICQ96RK0 1608 aaPredicted RBP18.24■□□□□ 0.51
CXCL12-205ENST00000395794 TJP1Q07157 1748 aa18.24■□□□□ 0.51
CXCL12-205ENST00000395794 HTATSF1O43719 755 aaKnown RBP18.24■□□□□ 0.51
CXCL12-205ENST00000395794 YBX3P16989 372 aaKnown RBP eCLIP18.24■□□□□ 0.51
CXCL12-205ENST00000395794 ZNF496Q96IT1 587 aaPredicted RBP18.24■□□□□ 0.51
CXCL12-205ENST00000395794 SRP68Q9UHB9 627 aaKnown RBP18.24■□□□□ 0.51
CXCL12-205ENST00000395794 SOS1Q07889 1333 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms