RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 PDE3AQ14432 1141 aa23.85■■□□□ 1.41
CCDC50-202ENST00000392456 AMOTQ4VCS5 1084 aa23.85■■□□□ 1.41
CCDC50-202ENST00000392456 MEGF6O75095 1541 aa23.84■■□□□ 1.41
CCDC50-202ENST00000392456 AHDC1Q5TGY3 1603 aaPredicted RBP23.84■■□□□ 1.41
CCDC50-202ENST00000392456 AKAP4Q5JQC9 854 aa23.84■■□□□ 1.41
CCDC50-202ENST00000392456 RAPGEF4Q8WZA2 1011 aa23.84■■□□□ 1.41
CCDC50-202ENST00000392456 STRN4Q9NRL3 753 aa23.84■■□□□ 1.41
CCDC50-202ENST00000392456 FAM208AQ9UK61 1670 aaKnown RBP23.84■■□□□ 1.41
CCDC50-202ENST00000392456 TOM1O60784 492 aa23.83■■□□□ 1.41
CCDC50-202ENST00000392456 CEMIPQ8WUJ3 1361 aa23.83■■□□□ 1.4
CCDC50-202ENST00000392456 SLC4A3P48751 1232 aa23.83■■□□□ 1.4
CCDC50-202ENST00000392456 WDR17Q8IZU2 1322 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 COL5A2P05997 1499 aaPredicted RBP23.82■■□□□ 1.4
CCDC50-202ENST00000392456 TRIM27P14373 513 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 LARP1Q6PKG0 1096 aaKnown RBP23.82■■□□□ 1.4
CCDC50-202ENST00000392456 TOM1L2Q6ZVM7 507 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 ABCC6O95255 1503 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 ALDH1L2Q3SY69 923 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 ZKSCAN2Q63HK3 967 aa23.82■■□□□ 1.4
CCDC50-202ENST00000392456 UBAP1LF5GYI3 381 aa23.81■■□□□ 1.4
CCDC50-202ENST00000392456 TAF7Q15545 349 aaPredicted RBP23.81■■□□□ 1.4
CCDC50-202ENST00000392456 MRPL50Q8N5N7 158 aaKnown RBP23.81■■□□□ 1.4
CCDC50-202ENST00000392456 LRRC37A3O60309 1634 aa23.8■■□□□ 1.4
CCDC50-202ENST00000392456 TATP17735 454 aaPredicted RBP23.8■■□□□ 1.4
CCDC50-202ENST00000392456 C1orf141Q5JVX7 400 aa23.79■■□□□ 1.4
CCDC50-202ENST00000392456 SMAP1Q8IYB5 467 aaPredicted RBP23.79■■□□□ 1.4
CCDC50-202ENST00000392456 RNMTO43148 476 aaKnown RBP23.78■■□□□ 1.4
CCDC50-202ENST00000392456 BTG4Q9NY30 223 aa23.78■■□□□ 1.4
CCDC50-202ENST00000392456 ATF7IPQ6VMQ6 1270 aa23.78■■□□□ 1.4
CCDC50-202ENST00000392456 ZNF428Q96B54 188 aa23.78■■□□□ 1.4
CCDC50-202ENST00000392456 KCNQ3O43525 872 aa23.77■■□□□ 1.4
CCDC50-202ENST00000392456 EVA1CP58658 441 aa23.77■■□□□ 1.4
CCDC50-202ENST00000392456 DZIP1LQ8IYY4 767 aaKnown RBP23.76■■□□□ 1.39
CCDC50-202ENST00000392456 CYP27B1O15528 508 aa23.76■■□□□ 1.39
CCDC50-202ENST00000392456 BRPF1P55201 1214 aaPredicted RBP23.75■■□□□ 1.39
CCDC50-202ENST00000392456 COL16A1Q07092 1604 aaPredicted RBP23.75■■□□□ 1.39
CCDC50-202ENST00000392456 PHLPP1O60346 1717 aa23.74■■□□□ 1.39
CCDC50-202ENST00000392456 ADAMTS2O95450 1211 aa23.74■■□□□ 1.39
CCDC50-202ENST00000392456 PHKG2P15735 406 aa23.74■■□□□ 1.39
CCDC50-202ENST00000392456 TEFQ10587 303 aa23.74■■□□□ 1.39
CCDC50-202ENST00000392456 FTSJ3Q8IY81 847 aaKnown RBP23.74■■□□□ 1.39
CCDC50-202ENST00000392456 KIF16BQ96L93 1317 aa23.73■■□□□ 1.39
CCDC50-202ENST00000392456 CARD10Q9BWT7 1032 aa23.73■■□□□ 1.39
CCDC50-202ENST00000392456 SPG7Q9UQ90 795 aa23.73■■□□□ 1.39
CCDC50-202ENST00000392456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.72■■□□□ 1.396e-7■■□□□ 12.3
CCDC50-202ENST00000392456 NUTM2BA6NNL0 878 aaPredicted RBP23.71■■□□□ 1.39
CCDC50-202ENST00000392456 NUTM2EB1AL46 878 aaPredicted RBP23.71■■□□□ 1.39
CCDC50-202ENST00000392456 NUTM2AQ8IVF1 878 aaPredicted RBP23.71■■□□□ 1.39
CCDC50-202ENST00000392456 TMEM57Q8N5G2 664 aa23.71■■□□□ 1.39
CCDC50-202ENST00000392456 NECTIN2Q92692 538 aa23.71■■□□□ 1.39
CCDC50-202ENST00000392456 XRCC6P12956 609 aaKnown RBP eCLIP23.71■■□□□ 1.39
CCDC50-202ENST00000392456 MVPQ14764 893 aaKnown RBP23.71■■□□□ 1.39
CCDC50-202ENST00000392456 BTBD11A6QL63 1104 aa23.7■■□□□ 1.38
CCDC50-202ENST00000392456 KDM6AO15550 1401 aaPredicted RBP23.7■■□□□ 1.38
CCDC50-202ENST00000392456 COL22A1Q8NFW1 1626 aaPredicted RBP23.7■■□□□ 1.38
CCDC50-202ENST00000392456 IPO8O15397 1037 aaKnown RBP23.7■■□□□ 1.38
CCDC50-202ENST00000392456 IFNL2Q8IZJ0 200 aa23.69■■□□□ 1.38
CCDC50-202ENST00000392456 OVOS2A0A0G2JMS6 1433 aa23.69■■□□□ 1.38
CCDC50-202ENST00000392456 BABAM1Q9NWV8 329 aa23.69■■□□□ 1.38
CCDC50-202ENST00000392456 ZHX1Q9UKY1 873 aaPredicted RBP23.69■■□□□ 1.38
CCDC50-202ENST00000392456 SLC4A2P04920 1241 aa23.68■■□□□ 1.38
CCDC50-202ENST00000392456 EIF4A1P60842 406 aaKnown RBP23.68■■□□□ 1.38
CCDC50-202ENST00000392456 SKAP1Q86WV1 359 aa23.68■■□□□ 1.38
CCDC50-202ENST00000392456 NCLP19338 710 aaKnown RBP23.68■■□□□ 1.38
CCDC50-202ENST00000392456 ITPRIPQ8IWB1 547 aa23.68■■□□□ 1.38
CCDC50-202ENST00000392456 G2E3Q7L622 706 aa23.67■■□□□ 1.38
CCDC50-202ENST00000392456 ARXQ96QS3 562 aa23.67■■□□□ 1.38
CCDC50-202ENST00000392456 IL2RBP14784 551 aa23.67■■□□□ 1.38
CCDC50-202ENST00000392456 NFATC2IPQ8NCF5 419 aa23.67■■□□□ 1.38
CCDC50-202ENST00000392456 ZCRB1Q8TBF4 217 aaKnown RBP23.66■■□□□ 1.38
CCDC50-202ENST00000392456 MAP7D2Q96T17 732 aa23.66■■□□□ 1.38
CCDC50-202ENST00000392456 PCDHB15Q9Y5E8 787 aa23.66■■□□□ 1.38
CCDC50-202ENST00000392456 VIRMAQ69YN4 1812 aaKnown RBP23.66■■□□□ 1.38
CCDC50-202ENST00000392456 CERKQ8TCT0 537 aa23.66■■□□□ 1.38
CCDC50-202ENST00000392456 IGHDP01880 384 aa23.65■■□□□ 1.38
CCDC50-202ENST00000392456 SLC39A6Q13433 755 aa23.65■■□□□ 1.38
CCDC50-202ENST00000392456 ARHGAP45Q92619 1136 aa23.65■■□□□ 1.38
CCDC50-202ENST00000392456 KDM2BQ8NHM5 1336 aa23.65■■□□□ 1.38
CCDC50-202ENST00000392456 UTP14CQ5TAP6 766 aaKnown RBP23.64■■□□□ 1.37
CCDC50-202ENST00000392456 ESPNB1AK53 854 aa23.64■■□□□ 1.37
CCDC50-202ENST00000392456 DDX54Q8TDD1 881 aaKnown RBP23.64■■□□□ 1.37
CCDC50-202ENST00000392456 SLC52A2Q9HAB3 445 aa23.64■■□□□ 1.37
CCDC50-202ENST00000392456 PKD1L3Q7Z443 1732 aa23.63■■□□□ 1.37
CCDC50-202ENST00000392456 FSD2A1L4K1 749 aa23.63■■□□□ 1.37
CCDC50-202ENST00000392456 PRAMEF22A3QJZ6 481 aa23.63■■□□□ 1.37
CCDC50-202ENST00000392456 ADAMTS7Q9UKP4 1686 aa23.63■■□□□ 1.37
CCDC50-202ENST00000392456 DCAF5Q96JK2 942 aa23.62■■□□□ 1.37
CCDC50-202ENST00000392456 COL14A1Q05707 1796 aaKnown RBP23.62■■□□□ 1.37
CCDC50-202ENST00000392456 EIF2S2P20042 333 aaKnown RBP23.61■■□□□ 1.37
CCDC50-202ENST00000392456 KDM3BQ7LBC6 1761 aa23.61■■□□□ 1.37
CCDC50-202ENST00000392456 ABCC4O15439 1325 aa23.61■■□□□ 1.37
CCDC50-202ENST00000392456 PANK2Q9BZ23 570 aa23.6■■□□□ 1.37
CCDC50-202ENST00000392456 TMEM51Q9NW97 253 aa23.6■■□□□ 1.37
CCDC50-202ENST00000392456 RGS12O14924 1447 aa23.6■■□□□ 1.37
CCDC50-202ENST00000392456 ERBB4Q15303 1308 aa23.6■■□□□ 1.37
CCDC50-202ENST00000392456 DDX19BQ9UMR2 479 aa23.59■■□□□ 1.37
CCDC50-202ENST00000392456 SCN11AQ9UI33 1791 aa23.59■■□□□ 1.37
CCDC50-202ENST00000392456 HDGFL1Q5TGJ6 251 aa23.59■■□□□ 1.37
CCDC50-202ENST00000392456 CCDC30Q5VVM6 783 aa23.59■■□□□ 1.37
CCDC50-202ENST00000392456 PCDH11XQ9BZA7 1347 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms