RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ZBTB22O15209 634 aa17.77■□□□□ 0.43
VPS9D1-201ENST00000389386 NSD2O96028 1365 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 PLEKHG1Q9ULL1 1385 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 PHF14O94880 888 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 BRD1O95696 1058 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 VGLL3A8MV65 326 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 PLEKHF1Q96S99 279 aa17.76■□□□□ 0.43
VPS9D1-201ENST00000389386 GABPB1Q06547 395 aaPredicted RBP17.75■□□□□ 0.43
VPS9D1-201ENST00000389386 PLCD3Q8N3E9 789 aa17.75■□□□□ 0.43
VPS9D1-201ENST00000389386 KIAA1524Q8TCG1 905 aa17.75■□□□□ 0.43
VPS9D1-201ENST00000389386 SETD1BQ9UPS6 1966 aaKnown RBP17.75■□□□□ 0.43
VPS9D1-201ENST00000389386 TTC22Q5TAA0 569 aa17.74■□□□□ 0.43
VPS9D1-201ENST00000389386 INTS3Q68E01 1043 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-201ENST00000389386 RBM33Q96EV2 1170 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-201ENST00000389386 CHAF1AQ13111 956 aaPredicted RBP17.74■□□□□ 0.43
VPS9D1-201ENST00000389386 NME9Q86XW9 330 aa17.74■□□□□ 0.43
VPS9D1-201ENST00000389386 BRPF1P55201 1214 aaPredicted RBP17.73■□□□□ 0.43
VPS9D1-201ENST00000389386 AMOTL2Q9Y2J4 779 aa17.73■□□□□ 0.43
VPS9D1-201ENST00000389386 ROBO2Q9HCK4 1378 aa17.73■□□□□ 0.43
VPS9D1-201ENST00000389386 ARHGAP23Q9P227 1491 aa17.73■□□□□ 0.43
VPS9D1-201ENST00000389386 SLIT1O75093 1534 aa17.73■□□□□ 0.43
VPS9D1-201ENST00000389386 ANKLE2Q86XL3 938 aa17.72■□□□□ 0.43
VPS9D1-201ENST00000389386 WASLO00401 505 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-201ENST00000389386 GADD45BO75293 160 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-201ENST00000389386 SLFN14P0C7P3 912 aa17.72■□□□□ 0.43
VPS9D1-201ENST00000389386 PTPRUQ92729 1446 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 PIK3R4Q99570 1358 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 DIAPH1O60610 1272 aaKnown RBP17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 HMOX1P09601 288 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 CTNNA3Q9UI47 895 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 PYCARDQ9ULZ3 195 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 EMILIN1Q9Y6C2 1016 aa17.71■□□□□ 0.43
VPS9D1-201ENST00000389386 TMX3Q96JJ7 454 aa17.71■□□□□ 0.42
VPS9D1-201ENST00000389386 KDM4AO75164 1064 aa17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 IRX5P78411 483 aaPredicted RBP17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 NCBP1Q09161 790 aaKnown RBP17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 NUDT16Q96DE0 195 aaKnown RBP17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 KCNF1Q9H3M0 494 aa17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 POLKQ9UBT6 870 aa17.7■□□□□ 0.42
VPS9D1-201ENST00000389386 HSPA2P54652 639 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 SYCP1Q15431 976 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 C16orf71Q8IYS4 520 aaPredicted RBP17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 ARHGAP45Q92619 1136 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 DDX41Q9UJV9 622 aaKnown RBP17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 TBX22Q9Y458 520 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 HCLS1P14317 486 aaPredicted RBP17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 KCNJ4P48050 445 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 RRS1Q15050 365 aaKnown RBP17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 USP48Q86UV5 1035 aa17.68■□□□□ 0.42
VPS9D1-201ENST00000389386 KDM4FA0A1W2PPD8 638 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 SMARCA5O60264 1052 aaPredicted RBP17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 KCNA6P17658 529 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 SDSP20132 328 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 CDK11BP21127 795 aaKnown RBP17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 CUL4AQ13619 759 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 GDPD2Q9HCC8 539 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 COL3A1P02461 1466 aaPredicted RBP17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 ZNF428Q96B54 188 aa17.67■□□□□ 0.42
VPS9D1-201ENST00000389386 REC8O95072 547 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 CCDC183Q5T5S1 534 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 DCTPP1Q9H773 170 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 MORC2Q9Y6X9 1032 aaPredicted RBP17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 TPM3P06753 285 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 PRKAR2BP31323 418 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 CASC1Q6TDU7 716 aa17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 MRPL50Q8N5N7 158 aaKnown RBP17.66■□□□□ 0.42
VPS9D1-201ENST00000389386 PTCH1Q13635 1447 aa17.65■□□□□ 0.42
VPS9D1-201ENST00000389386 SOX12O15370 315 aa17.65■□□□□ 0.42
VPS9D1-201ENST00000389386 NEK4P51957 841 aa17.65■□□□□ 0.42
VPS9D1-201ENST00000389386 THUMPD2Q9BTF0 503 aaKnown RBP17.65■□□□□ 0.42
VPS9D1-201ENST00000389386 PRR36Q9H6K5 1346 aa17.65■□□□□ 0.42
VPS9D1-201ENST00000389386 TERF2Q15554 542 aa17.64■□□□□ 0.42
VPS9D1-201ENST00000389386 DLC1Q96QB1 1528 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 ABCC4O15439 1325 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 AP5Z1O43299 807 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 MCM2P49736 904 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 SLC20A2Q08357 652 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 OTUD7AQ8TE49 926 aaPredicted RBP17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 INTS4Q96HW7 963 aaKnown RBP17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 PHACTR3Q96KR7 559 aa17.64■□□□□ 0.41
VPS9D1-201ENST00000389386 CCDC66A2RUB6 948 aa17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 MX1P20591 662 aa17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 FOXD4L6Q3SYB3 417 aaPredicted RBP17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 FOXD4L3Q6VB84 417 aaPredicted RBP17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 CCDC61Q9Y6R9 512 aa17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 MAP2P11137 1827 aaKnown RBP17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 ERC2O15083 957 aa17.63■□□□□ 0.41
VPS9D1-201ENST00000389386 KIF20BQ96Q89 1820 aa17.62■□□□□ 0.41
VPS9D1-201ENST00000389386 TMEM87AQ8NBN3 555 aa17.62■□□□□ 0.41
VPS9D1-201ENST00000389386 TECPR2O15040 1411 aa17.62■□□□□ 0.41
VPS9D1-201ENST00000389386 VAMP4O75379 141 aa17.62■□□□□ 0.41
VPS9D1-201ENST00000389386 ANKRD26Q9UPS8 1709 aa17.61■□□□□ 0.41
VPS9D1-201ENST00000389386 TIGD1Q96MW7 591 aa17.61■□□□□ 0.41
VPS9D1-201ENST00000389386 KIF18AQ8NI77 898 aa17.61■□□□□ 0.41
VPS9D1-201ENST00000389386 ZNF142P52746 1687 aaPredicted RBP17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 SMTNL1A8MU46 457 aa17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 PLCB2Q00722 1185 aa17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 FUCA2Q9BTY2 467 aa17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 FAM135BQ49AJ0 1406 aa17.6■□□□□ 0.41
VPS9D1-201ENST00000389386 CPS1P31327 1500 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms