RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 COL23A1Q86Y22 540 aaPredicted RBP33.28■■■□□ 2.92
TNFRSF4-201ENST00000379236 KDM6AO15550 1401 aaPredicted RBP33.28■■■□□ 2.92
TNFRSF4-201ENST00000379236 ATP6V1AP38606 617 aa33.27■■■□□ 2.92
TNFRSF4-201ENST00000379236 KLHL34Q8N239 644 aa33.27■■■□□ 2.92
TNFRSF4-201ENST00000379236 ATG3Q9NT62 314 aa33.27■■■□□ 2.92
TNFRSF4-201ENST00000379236 SYT17Q9BSW7 474 aa33.25■■■□□ 2.91
TNFRSF4-201ENST00000379236 ZNF831Q5JPB2 1677 aa33.23■■■□□ 2.91
TNFRSF4-201ENST00000379236 RBM42Q9BTD8 480 aaKnown RBP33.22■■■□□ 2.91
TNFRSF4-201ENST00000379236 U2SURPO15042 1029 aaKnown RBP33.21■■■□□ 2.91
TNFRSF4-201ENST00000379236 PHF14O94880 888 aa33.21■■■□□ 2.91
TNFRSF4-201ENST00000379236 AKAP4Q5JQC9 854 aa33.21■■■□□ 2.91
TNFRSF4-201ENST00000379236 CFAP53Q96M91 514 aa33.21■■■□□ 2.91
TNFRSF4-201ENST00000379236 COL3A1P02461 1466 aaPredicted RBP33.2■■■□□ 2.91
TNFRSF4-201ENST00000379236 LINC00116Q8NCU8 138 aa33.2■■■□□ 2.91
TNFRSF4-201ENST00000379236 MSL1Q68DK7 614 aa33.19■■■□□ 2.9
TNFRSF4-201ENST00000379236 MAP3K5Q99683 1374 aa33.19■■■□□ 2.9
TNFRSF4-201ENST00000379236 COL5A3P25940 1745 aaPredicted RBP33.18■■■□□ 2.9
TNFRSF4-201ENST00000379236 ITPK1Q13572 414 aa33.17■■■□□ 2.9
TNFRSF4-201ENST00000379236 GNPATO15228 680 aa33.16■■■□□ 2.9
TNFRSF4-201ENST00000379236 SSFA2P28290 1259 aa33.16■■■□□ 2.9
TNFRSF4-201ENST00000379236 NFATC2IPQ8NCF5 419 aa33.16■■■□□ 2.9
TNFRSF4-201ENST00000379236 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.15■■■□□ 2.9
TNFRSF4-201ENST00000379236 MTHFSDQ2M296 383 aaKnown RBP33.11■■■□□ 2.89
TNFRSF4-201ENST00000379236 PTCD1O75127 700 aaKnown RBP33.1■■■□□ 2.89
TNFRSF4-201ENST00000379236 YY1P25490 414 aa33.1■■■□□ 2.89
TNFRSF4-201ENST00000379236 NUDCQ9Y266 331 aa33.1■■■□□ 2.89
TNFRSF4-201ENST00000379236 RNMTO43148 476 aaKnown RBP33.08■■■□□ 2.89
TNFRSF4-201ENST00000379236 SMIM5Q71RC9 77 aa33.08■■■□□ 2.89
TNFRSF4-201ENST00000379236 AMIGO3Q86WK7 504 aa33.08■■■□□ 2.89
TNFRSF4-201ENST00000379236 SLC52A2Q9HAB3 445 aa33.08■■■□□ 2.89
TNFRSF4-201ENST00000379236 RTCBQ9Y3I0 505 aaKnown RBP33.08■■■□□ 2.89
TNFRSF4-201ENST00000379236 CHD4Q14839 1912 aa33.07■■■□□ 2.88
TNFRSF4-201ENST00000379236 PPP2R1AP30153 589 aa33.07■■■□□ 2.88
TNFRSF4-201ENST00000379236 SLC4A9Q96Q91 983 aa33.07■■■□□ 2.88
TNFRSF4-201ENST00000379236 LGR6Q9HBX8 967 aa33.07■■■□□ 2.88
TNFRSF4-201ENST00000379236 MRC1P22897 1456 aa33.06■■■□□ 2.88
TNFRSF4-201ENST00000379236 TJP1Q07157 1748 aa33.06■■■□□ 2.88
TNFRSF4-201ENST00000379236 ADAMTS7Q9UKP4 1686 aa33.06■■■□□ 2.88
TNFRSF4-201ENST00000379236 GAS2L2Q8NHY3 880 aa33.05■■■□□ 2.88
TNFRSF4-201ENST00000379236 CNTNAP4Q9C0A0 1308 aa33.04■■■□□ 2.88
TNFRSF4-201ENST00000379236 CICQ96RK0 1608 aaPredicted RBP33.04■■■□□ 2.88
TNFRSF4-201ENST00000379236 GPR162Q16538 588 aa33.04■■■□□ 2.88
TNFRSF4-201ENST00000379236 PELP1Q8IZL8 1130 aaKnown RBP33.04■■■□□ 2.88
TNFRSF4-201ENST00000379236 MYH14Q7Z406 1995 aaKnown RBP33.03■■■□□ 2.88
TNFRSF4-201ENST00000379236 TRAPPC3LQ5T215 181 aa33.03■■■□□ 2.88
TNFRSF4-201ENST00000379236 RC3H1Q5TC82 1133 aaKnown RBP33.03■■■□□ 2.88
TNFRSF4-201ENST00000379236 NLGN2Q8NFZ4 835 aa33■■■□□ 2.87
TNFRSF4-201ENST00000379236 C4AP0C0L4 1744 aa32.99■■■□□ 2.87
TNFRSF4-201ENST00000379236 GNAT3A8MTJ3 354 aa32.99■■■□□ 2.87
TNFRSF4-201ENST00000379236 ADRA2BP18089 450 aa32.99■■■□□ 2.87
TNFRSF4-201ENST00000379236 U2AF1L5P0DN76 240 aaPredicted RBP32.98■■■□□ 2.87
TNFRSF4-201ENST00000379236 PRKAR2BP31323 418 aa32.98■■■□□ 2.87
TNFRSF4-201ENST00000379236 U2AF1Q01081 240 aaKnown RBP eCLIP32.98■■■□□ 2.87
TNFRSF4-201ENST00000379236 RPS6KA4O75676 772 aa32.97■■■□□ 2.87
TNFRSF4-201ENST00000379236 RFC4P35249 363 aa32.96■■■□□ 2.87
TNFRSF4-201ENST00000379236 CRKLP46109 303 aaKnown RBP32.96■■■□□ 2.87
TNFRSF4-201ENST00000379236 TEFQ10587 303 aa32.96■■■□□ 2.87
TNFRSF4-201ENST00000379236 UBR2Q8IWV8 1755 aa32.96■■■□□ 2.87
TNFRSF4-201ENST00000379236 SLC39A6Q13433 755 aa32.95■■■□□ 2.87
TNFRSF4-201ENST00000379236 RSPH6AQ9H0K4 717 aa32.95■■■□□ 2.87
TNFRSF4-201ENST00000379236 CD2APQ9Y5K6 639 aa32.95■■■□□ 2.87
TNFRSF4-201ENST00000379236 SIPA1L3O60292 1781 aaPredicted RBP32.94■■■□□ 2.86
TNFRSF4-201ENST00000379236 TTC5Q8N0Z6 440 aa32.94■■■□□ 2.86
TNFRSF4-201ENST00000379236 ARHGEF1Q92888 912 aaKnown RBP32.93■■■□□ 2.86
TNFRSF4-201ENST00000379236 KCPQ6ZWJ8 1503 aa32.92■■■□□ 2.86
TNFRSF4-201ENST00000379236 DNAJC10Q8IXB1 793 aa32.9■■■□□ 2.86
TNFRSF4-201ENST00000379236 NLGN1Q8N2Q7 840 aa32.9■■■□□ 2.86
TNFRSF4-201ENST00000379236 MMP10P09238 476 aa32.89■■■□□ 2.86
TNFRSF4-201ENST00000379236 PHACTR3Q96KR7 559 aa32.89■■■□□ 2.86
TNFRSF4-201ENST00000379236 UTRNP46939 3433 aa32.89■■■□□ 2.86
TNFRSF4-201ENST00000379236 FCHSD2O94868 740 aa32.88■■■□□ 2.85
TNFRSF4-201ENST00000379236 NEFMP07197 916 aa32.88■■■□□ 2.85
TNFRSF4-201ENST00000379236 CCDC87Q9NVE4 849 aa32.87■■■□□ 2.85
TNFRSF4-201ENST00000379236 IL17REQ8NFR9 667 aa32.86■■■□□ 2.85
TNFRSF4-201ENST00000379236 VSIG10Q8N0Z9 540 aa32.85■■■□□ 2.85
TNFRSF4-201ENST00000379236 RTF1Q92541 710 aaKnown RBP32.85■■■□□ 2.85
TNFRSF4-201ENST00000379236 GYS1P13807 737 aa32.84■■■□□ 2.85
TNFRSF4-201ENST00000379236 GRIN3BO60391 1043 aa32.83■■■□□ 2.85
TNFRSF4-201ENST00000379236 INTS5Q6P9B9 1019 aaKnown RBP32.83■■■□□ 2.85
TNFRSF4-201ENST00000379236 KIF13BQ9NQT8 1826 aa32.83■■■□□ 2.85
TNFRSF4-201ENST00000379236 GOLGB1Q14789 3259 aaKnown RBP32.83■■■□□ 2.85
TNFRSF4-201ENST00000379236 CYP19A1P11511 503 aaPredicted RBP32.81■■■□□ 2.84
TNFRSF4-201ENST00000379236 PARP3Q9Y6F1 533 aa32.81■■■□□ 2.84
TNFRSF4-201ENST00000379236 DLG5Q8TDM6 1919 aa32.81■■■□□ 2.84
TNFRSF4-201ENST00000379236 DDX10Q13206 875 aaKnown RBP32.8■■■□□ 2.84
TNFRSF4-201ENST00000379236 ZNF790Q6PG37 636 aa32.8■■■□□ 2.84
TNFRSF4-201ENST00000379236 CEMIPQ8WUJ3 1361 aa32.8■■■□□ 2.84
TNFRSF4-201ENST00000379236 USP42Q9H9J4 1324 aaKnown RBP32.79■■■□□ 2.84
TNFRSF4-201ENST00000379236 ZPR1O75312 459 aa32.79■■■□□ 2.84
TNFRSF4-201ENST00000379236 BTBD11A6QL63 1104 aa32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 STARD3NLO95772 234 aa32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 YBX3P16989 372 aaKnown RBP eCLIP32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 RALBP1Q15311 655 aa32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 SRP68Q9UHB9 627 aaKnown RBP32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 N4BP2Q86UW6 1770 aaPredicted RBP32.78■■■□□ 2.84
TNFRSF4-201ENST00000379236 SOS1Q07889 1333 aaPredicted RBP32.77■■■□□ 2.84
TNFRSF4-201ENST00000379236 COL15A1P39059 1388 aa32.76■■■□□ 2.83
TNFRSF4-201ENST00000379236 HEG1Q9ULI3 1381 aa32.76■■■□□ 2.83
TNFRSF4-201ENST00000379236 FMNL2Q96PY5 1086 aa32.76■■■□□ 2.83
TNFRSF4-201ENST00000379236 ZNF496Q96IT1 587 aaPredicted RBP32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms