RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 NUCB2P80303 420 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 HDAC1Q13547 482 aaPredicted RBP17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 SF3A1Q15459 793 aaKnown RBP17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 CCDC158Q5M9N0 1113 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 MCTP1Q6DN14 999 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 SHROOM2Q13796 1616 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 PRR36Q9H6K5 1346 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 VPS37CA5D8V6 355 aaPredicted RBP17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 HIP1O00291 1037 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 CPLX1O14810 134 aa17.11■□□□□ 0.33
SHROOM1-203ENST00000378679 BLMP54132 1417 aaPredicted RBP17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 MPHOSPH8Q99549 860 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 CLTCL1P53675 1640 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 SYNE3Q6ZMZ3 975 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 PPP1R42Q7Z4L9 355 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 KIF1BO60333 1816 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 CWC27Q6UX04 472 aaKnown RBP17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 RALYLQ86SE5 291 aaKnown RBP17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 CHMP4CQ96CF2 233 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 INSRP06213 1382 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 MAP3K5Q99683 1374 aa17.1■□□□□ 0.33
SHROOM1-203ENST00000378679 TULP1O00294 542 aaPredicted RBP17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 RAB11FIP3O75154 756 aa17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 NBPF6Q5VWK0 638 aa17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 NBPF4Q96M43 638 aa17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 ANKRD13DQ6ZTN6 518 aa17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 TBC1D2BQ9UPU7 963 aa17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 KDM5AP29375 1690 aaKnown RBP17.09■□□□□ 0.33
SHROOM1-203ENST00000378679 CHL1O00533 1208 aa17.08■□□□□ 0.33
SHROOM1-203ENST00000378679 COPS6Q7L5N1 327 aa17.08■□□□□ 0.33
SHROOM1-203ENST00000378679 JARID2Q92833 1246 aaPredicted RBP17.08■□□□□ 0.33
SHROOM1-203ENST00000378679 PIP4K2AP48426 406 aaPredicted RBP17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 UBE3BQ7Z3V4 1068 aa17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 GLRX3O76003 335 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 FKBP4Q02790 459 aaKnown RBP eCLIP17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 TTC39AQ5SRH9 613 aa17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 BICDL1Q6ZP65 573 aa17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 NOL10Q9BSC4 688 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 CROCC2H7BZ55 1655 aa17.08■□□□□ 0.32
SHROOM1-203ENST00000378679 UBAP1LF5GYI3 381 aa17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 XAGE3Q8WTP9 111 aa17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 ZBTB40Q9NUA8 1239 aa17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 TOM1O60784 492 aa17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 PSMA5P28066 241 aa17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 CCDC8Q9H0W5 538 aaPredicted RBP17.07■□□□□ 0.32
SHROOM1-203ENST00000378679 RNF17Q9BXT8 1623 aaKnown RBP17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 GPTP24298 496 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 SKOR2Q2VWA4 1001 aaPredicted RBP17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 ANKRD44Q8N8A2 993 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 ZMYM4Q5VZL5 1548 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 DRC7Q8IY82 874 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 LGR6Q9HBX8 967 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 A2ML1A8K2U0 1454 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 BOLA2Q9H3K6 86 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 RNF123Q5XPI4 1314 aa17.06■□□□□ 0.32
SHROOM1-203ENST00000378679 TSHZ3Q63HK5 1081 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 SLAIN2Q9P270 581 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 IL2RBP14784 551 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 AKAP17AQ02040 695 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 G2E3Q7L622 706 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 RNMTO43148 476 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 FBXW7Q969H0 707 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 MCM2P49736 904 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 BMP2KLQ5H9B9 411 aa17.05■□□□□ 0.32
SHROOM1-203ENST00000378679 NLRP1Q9C000 1473 aa17.04■□□□□ 0.32
SHROOM1-203ENST00000378679 NUCB1Q02818 461 aa17.04■□□□□ 0.32
SHROOM1-203ENST00000378679 NFXL1Q6ZNB6 911 aa17.04■□□□□ 0.32
SHROOM1-203ENST00000378679 PHAXQ9H814 394 aaKnown RBP17.04■□□□□ 0.32
SHROOM1-203ENST00000378679 KSR2Q6VAB6 950 aa17.03■□□□□ 0.32
SHROOM1-203ENST00000378679 DCAF5Q96JK2 942 aa17.03■□□□□ 0.32
SHROOM1-203ENST00000378679 TRMT112Q9UI30 125 aaKnown RBP17.03■□□□□ 0.32
SHROOM1-203ENST00000378679 NCBP3Q53F19 620 aaKnown RBP17.03■□□□□ 0.32
SHROOM1-203ENST00000378679 TEX13AQ9BXU3 409 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-203ENST00000378679 K7ELQ4 463 aaPredicted RBP17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 FOSBP53539 338 aa17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 MAP3K4Q9Y6R4 1608 aa17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 GOLGA6L6A8MZA4 724 aa17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 METTL24Q5JXM2 366 aa17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 AMOTL1Q8IY63 956 aa17.02■□□□□ 0.32
SHROOM1-203ENST00000378679 UPF3BQ9BZI7 483 aaKnown RBP17.02■□□□□ 0.31
SHROOM1-203ENST00000378679 NRDCO43847 1150 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 PKNOX2Q96KN3 472 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 PHF14O94880 888 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 TBC1D9Q6ZT07 1266 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 PLEKHF1Q96S99 279 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 FAM13BQ9NYF5 915 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 CYP46A1Q9Y6A2 500 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 SYNMO15061 1565 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 ZBTB7BO15156 539 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 IFIT5Q13325 482 aaKnown RBP17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 TMEM94Q12767 1356 aa17.01■□□□□ 0.31
SHROOM1-203ENST00000378679 BTG4Q9NY30 223 aa17■□□□□ 0.31
SHROOM1-203ENST00000378679 FAM135BQ49AJ0 1406 aa17■□□□□ 0.31
SHROOM1-203ENST00000378679 CWC25Q9NXE8 425 aaPredicted RBP17■□□□□ 0.31
SHROOM1-203ENST00000378679 SMC5Q8IY18 1101 aa17■□□□□ 0.31
SHROOM1-203ENST00000378679 LINS1Q8NG48 757 aa17■□□□□ 0.31
SHROOM1-203ENST00000378679 RHPN1Q8TCX5 695 aa17■□□□□ 0.31
SHROOM1-203ENST00000378679 ERICH2A1L162 156 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 GRM8O00222 908 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms