RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 V9GYY5 206 aaPredicted RBP11.47□□□□□ -0.57
SF3A3-201ENST00000373019 TRIM66O15016 1216 aa11.46□□□□□ -0.57
SF3A3-201ENST00000373019 LCMT1Q9UIC8 334 aa11.46□□□□□ -0.57
SF3A3-201ENST00000373019 PLEKHM2Q8IWE5 1019 aa11.46□□□□□ -0.57
SF3A3-201ENST00000373019 MED14O60244 1454 aa11.46□□□□□ -0.58
SF3A3-201ENST00000373019 ZBTB7BO15156 539 aaPredicted RBP11.46□□□□□ -0.58
SF3A3-201ENST00000373019 MUM1L1Q5H9M0 696 aa11.46□□□□□ -0.58
SF3A3-201ENST00000373019 SYT10Q6XYQ8 523 aa11.46□□□□□ -0.58
SF3A3-201ENST00000373019 ATG3Q9NT62 314 aa11.46□□□□□ -0.58
SF3A3-201ENST00000373019 CLGNO14967 610 aa11.45□□□□□ -0.58
SF3A3-201ENST00000373019 FHOD1Q9Y613 1164 aa11.45□□□□□ -0.58
SF3A3-201ENST00000373019 C1orf115Q9H7X2 142 aa11.45□□□□□ -0.58
SF3A3-201ENST00000373019 SRPK2P78362 688 aaKnown RBP11.45□□□□□ -0.58
SF3A3-201ENST00000373019 CUL4AQ13619 759 aa11.45□□□□□ -0.58
SF3A3-201ENST00000373019 SLFNL1Q499Z3 407 aa11.45□□□□□ -0.58
SF3A3-201ENST00000373019 SAMD1Q6SPF0 538 aaPredicted RBP11.45□□□□□ -0.58
SF3A3-201ENST00000373019 KDM5AP29375 1690 aaKnown RBP11.44□□□□□ -0.58
SF3A3-201ENST00000373019 HDGFP51858 240 aaKnown RBP11.44□□□□□ -0.58
SF3A3-201ENST00000373019 GTF2A1P52655 376 aaPredicted RBP11.44□□□□□ -0.58
SF3A3-201ENST00000373019 ELF2Q15723 593 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 TMEM87AQ8NBN3 555 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 NEK11Q8NG66 645 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 MYO1CO00159 1063 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 ICE2Q659A1 982 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 RTF1Q92541 710 aaKnown RBP11.44□□□□□ -0.58
SF3A3-201ENST00000373019 NRBP1Q9UHY1 535 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 PTPRCP08575 1304 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 CCDC186Q7Z3E2 898 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 GTF3C6Q969F1 213 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 IFT57Q9NWB7 429 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 PTPRMP28827 1452 aa11.44□□□□□ -0.58
SF3A3-201ENST00000373019 ADGRB2O60241 1585 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 GOLGA6L6A8MZA4 724 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 TTC22Q5TAA0 569 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 GIMAP6Q6P9H5 292 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 TNRQ92752 1358 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 PLA2G4AP47712 749 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 THEMISQ8N1K5 641 aaPredicted RBP11.43□□□□□ -0.58
SF3A3-201ENST00000373019 MADDQ8WXG6 1647 aa11.43□□□□□ -0.58
SF3A3-201ENST00000373019 BRPF1P55201 1214 aaPredicted RBP11.42□□□□□ -0.58
SF3A3-201ENST00000373019 EP400NLQ6ZTU2 488 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 C10orf67Q8IYJ2 551 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 EID1Q9Y6B2 187 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 RPAP1Q9BWH6 1393 aaPredicted RBP11.42□□□□□ -0.58
SF3A3-201ENST00000373019 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
SF3A3-201ENST00000373019 CASQ1P31415 396 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 TSGA10IPQ3SY00 556 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 RBM33Q96EV2 1170 aaKnown RBP11.42□□□□□ -0.58
SF3A3-201ENST00000373019 NCAPGQ9BPX3 1015 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 H2AFXP16104 143 aaPredicted RBP11.42□□□□□ -0.58
SF3A3-201ENST00000373019 CEP135Q66GS9 1140 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 ZSCAN25Q6NSZ9 544 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 RAD50Q92878 1312 aa11.42□□□□□ -0.58
SF3A3-201ENST00000373019 INTS3Q68E01 1043 aaKnown RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 C16orf71Q8IYS4 520 aaPredicted RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 RIMS1Q86UR5 1692 aaKnown RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 APPP05067 770 aa11.41□□□□□ -0.58
SF3A3-201ENST00000373019 NEK4P51957 841 aa11.41□□□□□ -0.58
SF3A3-201ENST00000373019 CT47A1Q5JQC4 288 aaPredicted RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 KRBA2Q6ZNG9 492 aa11.41□□□□□ -0.58
SF3A3-201ENST00000373019 TULP1O00294 542 aaPredicted RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 GUCY2CP25092 1073 aa11.41□□□□□ -0.58
SF3A3-201ENST00000373019 BMS1Q14692 1282 aaKnown RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 CNPY2Q9Y2B0 182 aa11.41□□□□□ -0.58
SF3A3-201ENST00000373019 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.41□□□□□ -0.58
SF3A3-201ENST00000373019 ABCC11Q96J66 1382 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 USP27XA6NNY8 438 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 ST5P78524 1137 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 INTS4Q96HW7 963 aaKnown RBP11.4□□□□□ -0.58
SF3A3-201ENST00000373019 MYCBPQ99417 103 aaPredicted RBP11.4□□□□□ -0.58
SF3A3-201ENST00000373019 ZNF592Q92610 1267 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 ERO1AQ96HE7 468 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 SRCIN1Q9C0H9 1055 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 EXOC6BQ9Y2D4 811 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 TPD52L1Q16890 204 aaPredicted RBP11.4□□□□□ -0.58
SF3A3-201ENST00000373019 TPRNQ4KMQ1 711 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 AXDND1Q5T1B0 1012 aaPredicted RBP11.4□□□□□ -0.58
SF3A3-201ENST00000373019 CTR9Q6PD62 1173 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 TRIM35Q9UPQ4 493 aa11.4□□□□□ -0.58
SF3A3-201ENST00000373019 FER1L4A9Z1Z3 1794 aa11.4□□□□□ -0.59
SF3A3-201ENST00000373019 IPO8O15397 1037 aaKnown RBP11.39□□□□□ -0.59
SF3A3-201ENST00000373019 PNMA6AP0CW24 399 aaPredicted RBP11.39□□□□□ -0.59
SF3A3-201ENST00000373019 SDSP20132 328 aa11.39□□□□□ -0.59
SF3A3-201ENST00000373019 CACTINQ8WUQ7 758 aaKnown RBP11.39□□□□□ -0.59
SF3A3-201ENST00000373019 ERVK-7P63135 1459 aa11.39□□□□□ -0.59
SF3A3-201ENST00000373019 OTUD7AQ8TE49 926 aaPredicted RBP11.39□□□□□ -0.59
SF3A3-201ENST00000373019 SMARCE1Q969G3 411 aa11.39□□□□□ -0.59
SF3A3-201ENST00000373019 UBE2HP62256 183 aa11.39□□□□□ -0.59
SF3A3-201ENST00000373019 C14orf37Q86TY3 774 aa11.39□□□□□ -0.59
SF3A3-201ENST00000373019 TXLNBQ8N3L3 684 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 CFAP44Q96MT7 982 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 CLCN6P51797 869 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 ZNF622Q969S3 477 aaKnown RBP eCLIP11.38□□□□□ -0.593e-11■□□□□ 9.7
SF3A3-201ENST00000373019 BRMS1Q9HCU9 246 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 AATKQ6ZMQ8 1374 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 MTHFSP49914 203 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 SLC26A8Q96RN1 970 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 UBXN6Q9BZV1 441 aa11.38□□□□□ -0.59
SF3A3-201ENST00000373019 KNDC1Q76NI1 1749 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms