RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SLC52A2Q9HAB3 445 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 ELL2O00472 640 aaPredicted RBP5.3□□□□□ -1.56
LIG4-201ENST00000356922 TSPYL6Q8N831 410 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 ATG3Q9NT62 314 aa5.3□□□□□ -1.56
LIG4-201ENST00000356922 MBIPQ9NS73 344 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 VIRMAQ69YN4 1812 aaKnown RBP5.29□□□□□ -1.56
LIG4-201ENST00000356922 CCDC27Q2M243 656 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 ADAMTS7Q9UKP4 1686 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 BCL9O00512 1426 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 CHL1O00533 1208 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 PTCD1O75127 700 aaKnown RBP5.29□□□□□ -1.56
LIG4-201ENST00000356922 AMIGO3Q86WK7 504 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 TRMT2AQ8IZ69 625 aaKnown RBP5.29□□□□□ -1.56
LIG4-201ENST00000356922 C8orf58Q8NAV2 365 aa5.29□□□□□ -1.56
LIG4-201ENST00000356922 SLFN5Q08AF3 891 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 DEFB132Q7Z7B7 95 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 RTF1Q92541 710 aaKnown RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 ZNF496Q96IT1 587 aaPredicted RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 PNNQ9H307 717 aaKnown RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 LRRC4BQ9NT99 713 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 SCN11AQ9UI33 1791 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 ITGB4P16144 1822 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 SBF2Q86WG5 1849 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 TCERG1O14776 1098 aaKnown RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 PIP4K2AP48426 406 aaPredicted RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 CABP4P57796 275 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 TAF7Q15545 349 aaPredicted RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 DUSP27Q5VZP5 1158 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 DOT1LQ8TEK3 1739 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 BTBD11A6QL63 1104 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 ERVV-2B6SEH9 535 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 ZNF790Q6PG37 636 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 HTATSF1O43719 755 aaKnown RBP5.28□□□□□ -1.56
LIG4-201ENST00000356922 CFAP44Q96MT7 982 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 USP16Q9Y5T5 823 aa5.28□□□□□ -1.56
LIG4-201ENST00000356922 ZBED9Q6R2W3 1325 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 NEFMP07197 916 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 EIF4A1P60842 406 aaKnown RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 TEFQ10587 303 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 PPP4R3CPQ6ZMV5 832 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 FAM196AQ6ZSG2 479 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 NECTIN2Q92692 538 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 FANCIQ9NVI1 1328 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 SIPA1L3O60292 1781 aaPredicted RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 EXOSC9Q06265 439 aaKnown RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 GOLGA2Q08379 1002 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 ITPK1Q13572 414 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 WDR63Q8IWG1 891 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 TMOD3Q9NYL9 352 aa5.27□□□□□ -1.57
LIG4-201ENST00000356922 EN1Q05925 392 aaPredicted RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 NCBP3Q53F19 620 aaKnown RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 BCL11BQ9C0K0 894 aaPredicted RBP5.27□□□□□ -1.57
LIG4-201ENST00000356922 ANXA1P04083 346 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 TSPYL4Q9UJ04 414 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 MRC1P22897 1456 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 HEG1Q9ULI3 1381 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 GIGYF1O75420 1035 aaPredicted RBP5.26□□□□□ -1.57
LIG4-201ENST00000356922 APBA3O96018 575 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 HSP90AB1P08238 724 aaKnown RBP5.26□□□□□ -1.57
LIG4-201ENST00000356922 EZH2Q15910 746 aaKnown RBP5.26□□□□□ -1.57
LIG4-201ENST00000356922 PROSER3Q2NL68 480 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 UPF1Q92900 1129 aaKnown RBP eCLIP5.26□□□□□ -1.57
LIG4-201ENST00000356922 IFT57Q9NWB7 429 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 KCPQ6ZWJ8 1503 aa5.26□□□□□ -1.57
LIG4-201ENST00000356922 BTAF1O14981 1849 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 PLEKHG2Q9H7P9 1386 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 DNAJC10Q8IXB1 793 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 RBM42Q9BTD8 480 aaKnown RBP5.25□□□□□ -1.57
LIG4-201ENST00000356922 PDGFDQ9GZP0 370 aaPredicted RBP5.25□□□□□ -1.57
LIG4-201ENST00000356922 VAMP4O75379 141 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 A1BGP04217 495 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 BCL2L13Q9BXK5 485 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 LOC102724428A0A0B4J2F2 783 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 NBPF26B4DH59 902 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 SIK1P57059 783 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 PDIA6Q15084 440 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 NBPF14Q5TI25 921 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 NBPF10Q6P3W6 841 aaKnown RBP5.25□□□□□ -1.57
LIG4-201ENST00000356922 NBPF15Q8N660 670 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 CAMKK2Q96RR4 588 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 PALLDQ8WX93 1383 aa5.25□□□□□ -1.57
LIG4-201ENST00000356922 BCAR3O75815 825 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 GNAI1P63096 354 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 LMOD3Q0VAK6 560 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 LINC00116Q8NCU8 138 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 ZNF428Q96B54 188 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 TNNQ9UQP3 1299 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 IL16Q14005 1332 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 EIF2S2P20042 333 aaKnown RBP5.24□□□□□ -1.57
LIG4-201ENST00000356922 LRP10Q7Z4F1 713 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 NHSQ6T4R5 1651 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 MYH14Q7Z406 1995 aaKnown RBP5.24□□□□□ -1.57
LIG4-201ENST00000356922 KDM3BQ7LBC6 1761 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 E9PSI1 815 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 ATP6V1AP38606 617 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 TXNRD1Q16881 649 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 G2E3Q7L622 706 aa5.24□□□□□ -1.57
LIG4-201ENST00000356922 CYP19A1P11511 503 aaPredicted RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 INTS5Q6P9B9 1019 aaKnown RBP5.23□□□□□ -1.57
LIG4-201ENST00000356922 PHAXQ9H814 394 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms