RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 TAF1LQ8IZX4 1826 aa11.26□□□□□ -0.61
CD44-205ENST00000352818 SSFA2P28290 1259 aa11.26□□□□□ -0.61
CD44-205ENST00000352818 CARD11Q9BXL7 1154 aa11.26□□□□□ -0.61
CD44-205ENST00000352818 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
CD44-205ENST00000352818 SRPK2P78362 688 aaKnown RBP11.25□□□□□ -0.61
CD44-205ENST00000352818 LINC00116Q8NCU8 138 aa11.25□□□□□ -0.61
CD44-205ENST00000352818 ZC3H4Q9UPT8 1303 aaKnown RBP11.25□□□□□ -0.61
CD44-205ENST00000352818 ARFGEF1Q9Y6D6 1849 aa11.24□□□□□ -0.61
CD44-205ENST00000352818 PRPF38BQ5VTL8 546 aaKnown RBP11.24□□□□□ -0.61
CD44-205ENST00000352818 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
CD44-205ENST00000352818 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
CD44-205ENST00000352818 VIRMAQ69YN4 1812 aaKnown RBP11.23□□□□□ -0.61
CD44-205ENST00000352818 SBF1O95248 1867 aa11.23□□□□□ -0.61
CD44-205ENST00000352818 DALRD3Q5D0E6 543 aaKnown RBP11.23□□□□□ -0.61
CD44-205ENST00000352818 MCOLN1Q9GZU1 580 aa11.23□□□□□ -0.61
CD44-205ENST00000352818 PIM2Q9P1W9 311 aa11.23□□□□□ -0.61
CD44-205ENST00000352818 MEGF6O75095 1541 aa11.23□□□□□ -0.61
CD44-205ENST00000352818 ZCRB1Q8TBF4 217 aaKnown RBP11.22□□□□□ -0.61
CD44-205ENST00000352818 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
CD44-205ENST00000352818 CHRNA5P30532 468 aa11.21□□□□□ -0.61
CD44-205ENST00000352818 ITPK1Q13572 414 aa11.21□□□□□ -0.61
CD44-205ENST00000352818 RASSF10A6NK89 507 aa11.2□□□□□ -0.62
CD44-205ENST00000352818 CCDC87Q9NVE4 849 aa11.2□□□□□ -0.62
CD44-205ENST00000352818 TTC21AQ8NDW8 1320 aa11.19□□□□□ -0.62
CD44-205ENST00000352818 GNPATO15228 680 aa11.19□□□□□ -0.62
CD44-205ENST00000352818 ITGBL1O95965 494 aaPredicted RBP11.19□□□□□ -0.62
CD44-205ENST00000352818 LMNB1P20700 586 aa11.19□□□□□ -0.62
CD44-205ENST00000352818 FAM208AQ9UK61 1670 aaKnown RBP11.19□□□□□ -0.62
CD44-205ENST00000352818 USP31Q70CQ4 1352 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 KTN1Q86UP2 1357 aaKnown RBP11.18□□□□□ -0.62
CD44-205ENST00000352818 ST20-MTHFSA0A0A6YYL1 179 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 TMEM88BA6NKF7 163 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 MAP2K1Q02750 393 aaPredicted RBP11.18□□□□□ -0.62
CD44-205ENST00000352818 MPRIPQ6WCQ1 1025 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 PRKRIP1Q9H875 184 aaPredicted RBP11.18□□□□□ -0.62
CD44-205ENST00000352818 TSKSQ9UJT2 592 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 C4AP0C0L4 1744 aa11.18□□□□□ -0.62
CD44-205ENST00000352818 WDR33Q9C0J8 1336 aaKnown RBP11.17□□□□□ -0.62
CD44-205ENST00000352818 MAP2P11137 1827 aaKnown RBP11.17□□□□□ -0.62
CD44-205ENST00000352818 A0A0C4DFX4 3053 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 NFKBIEO00221 500 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 GYS1P13807 737 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 TMF1P82094 1093 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 NLGN1Q8N2Q7 840 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 LTV1Q96GA3 475 aaPredicted RBP11.17□□□□□ -0.62
CD44-205ENST00000352818 GTF3C3Q9Y5Q9 886 aa11.17□□□□□ -0.62
CD44-205ENST00000352818 LOC102724428A0A0B4J2F2 783 aa11.16□□□□□ -0.62
CD44-205ENST00000352818 SIK1P57059 783 aa11.16□□□□□ -0.62
CD44-205ENST00000352818 NBPF1Q3BBV0 1214 aa11.16□□□□□ -0.62
CD44-205ENST00000352818 SOX10P56693 466 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 DDR1Q08345 913 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 NME9Q86XW9 330 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 PIGBQ92521 554 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 IP6K1Q92551 441 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 TESK2Q96S53 571 aa11.15□□□□□ -0.62
CD44-205ENST00000352818 SZT2Q5T011 3432 aa11.15□□□□□ -0.63
CD44-205ENST00000352818 THSD7BQ9C0I4 1608 aa11.14□□□□□ -0.63
CD44-205ENST00000352818 HMGB2P26583 209 aaKnown RBP11.14□□□□□ -0.63
CD44-205ENST00000352818 DEFB115Q30KQ5 88 aa11.14□□□□□ -0.63
CD44-205ENST00000352818 ZNF692Q9BU19 519 aaPredicted RBP11.14□□□□□ -0.63
CD44-205ENST00000352818 LTBP1Q14766 1721 aa11.14□□□□□ -0.63
CD44-205ENST00000352818 CENPJQ9HC77 1338 aaPredicted RBP11.13□□□□□ -0.63
CD44-205ENST00000352818 ARHGEF1Q92888 912 aaKnown RBP11.13□□□□□ -0.63
CD44-205ENST00000352818 SMARCC1Q92922 1105 aaPredicted RBP11.13□□□□□ -0.63
CD44-205ENST00000352818 PARP3Q9Y6F1 533 aa11.13□□□□□ -0.63
CD44-205ENST00000352818 LTN1O94822 1766 aa11.13□□□□□ -0.63
CD44-205ENST00000352818 TIAM2Q8IVF5 1701 aa11.12□□□□□ -0.63
CD44-205ENST00000352818 CYP27B1O15528 508 aa11.12□□□□□ -0.63
CD44-205ENST00000352818 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-205ENST00000352818 CUL9Q8IWT3 2517 aa11.12□□□□□ -0.63
CD44-205ENST00000352818 SBNO2Q9Y2G9 1366 aa11.12□□□□□ -0.63
CD44-205ENST00000352818 SLC24A1O60721 1099 aa11.11□□□□□ -0.63
CD44-205ENST00000352818 DDNO94850 711 aaPredicted RBP11.11□□□□□ -0.63
CD44-205ENST00000352818 DGKZQ13574 1117 aa11.11□□□□□ -0.63
CD44-205ENST00000352818 HABP4Q5JVS0 413 aaKnown RBP11.11□□□□□ -0.63
CD44-205ENST00000352818 TRAPPC3LQ5T215 181 aa11.11□□□□□ -0.63
CD44-205ENST00000352818 LDHDQ86WU2 507 aa11.11□□□□□ -0.63
CD44-205ENST00000352818 SLC4A9Q96Q91 983 aa11.11□□□□□ -0.63
CD44-205ENST00000352818 MKI67P46013 3256 aaKnown RBP11.1□□□□□ -0.63
CD44-205ENST00000352818 NBPF6Q5VWK0 638 aa11.1□□□□□ -0.63
CD44-205ENST00000352818 USHBP1Q8N6Y0 703 aa11.1□□□□□ -0.63
CD44-205ENST00000352818 NBPF4Q96M43 638 aa11.1□□□□□ -0.63
CD44-205ENST00000352818 ASAP1Q9ULH1 1129 aa11.1□□□□□ -0.63
CD44-205ENST00000352818 FKBP8Q14318 412 aa11.09□□□□□ -0.63
CD44-205ENST00000352818 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
CD44-205ENST00000352818 TAF1DQ9H5J8 278 aaPredicted RBP11.09□□□□□ -0.63
CD44-205ENST00000352818 CD163L1Q9NR16 1453 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 FBLN1P23142 703 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 ATP6V1AP38606 617 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 RALBP1Q15311 655 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 CDCA8Q53HL2 280 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 CAPNS2Q96L46 248 aa11.08□□□□□ -0.64
CD44-205ENST00000352818 SRP68Q9UHB9 627 aaKnown RBP11.08□□□□□ -0.64
CD44-205ENST00000352818 RTCBQ9Y3I0 505 aaKnown RBP11.08□□□□□ -0.64
CD44-205ENST00000352818 KDRP35968 1356 aa11.07□□□□□ -0.64
CD44-205ENST00000352818 AOC2O75106 756 aa11.07□□□□□ -0.64
CD44-205ENST00000352818 FMR1Q06787 632 aaKnown RBP eCLIP11.07□□□□□ -0.64
CD44-205ENST00000352818 CYP4F22Q6NT55 531 aa11.07□□□□□ -0.64
CD44-205ENST00000352818 GPR101Q96P66 508 aaPredicted RBP11.07□□□□□ -0.64
CD44-205ENST00000352818 MRS2Q9HD23 443 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms