RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 SRRTQ9BXP5 876 aaKnown RBP7.15□□□□□ -1.26
VCAN-203ENST00000343200 OGFRQ9NZT2 677 aa7.15□□□□□ -1.26
VCAN-203ENST00000343200 K7ELQ4 463 aaPredicted RBP7.15□□□□□ -1.26
VCAN-203ENST00000343200 SCN2AQ99250 2005 aa7.15□□□□□ -1.26
VCAN-203ENST00000343200 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.15□□□□□ -1.27
VCAN-203ENST00000343200 OPA1O60313 960 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 GCKP35557 465 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 RPUSD2Q8IZ73 545 aaKnown RBP7.15□□□□□ -1.27
VCAN-203ENST00000343200 EXOC6Q8TAG9 804 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 FMN1Q68DA7 1419 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 IFIT2P09913 472 aaKnown RBP7.15□□□□□ -1.27
VCAN-203ENST00000343200 ATP6V1AP38606 617 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 ARHGAP25P42331 645 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 SNW1Q13573 536 aaKnown RBP7.15□□□□□ -1.27
VCAN-203ENST00000343200 SPECC1Q5M775 1068 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 CFAP58Q5T655 872 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 TRIM4Q9C037 500 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 IKBKGQ9Y6K9 419 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 ABCC9O60706 1549 aa7.15□□□□□ -1.27
VCAN-203ENST00000343200 MCM4P33991 863 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CNTROBQ8N137 903 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CFAP100Q494V2 611 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 MAATS1Q7Z4T9 603 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 RAB3GAP2Q9H2M9 1393 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CASQ2O14958 399 aaPredicted RBP7.14□□□□□ -1.27
VCAN-203ENST00000343200 PCK1P35558 622 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 TRIM21P19474 475 aaKnown RBP7.14□□□□□ -1.27
VCAN-203ENST00000343200 MAP3K9P80192 1104 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 SIN3AQ96ST3 1273 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 KIF27Q86VH2 1401 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 NLRP5P59047 1200 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 GABPB1Q06547 395 aaPredicted RBP7.14□□□□□ -1.27
VCAN-203ENST00000343200 STK38Q15208 465 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CTCFLQ8NI51 663 aaPredicted RBP7.14□□□□□ -1.27
VCAN-203ENST00000343200 TUBB4AP04350 444 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 PHLDB2Q86SQ0 1253 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CCDC110Q8TBZ0 833 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 CHMP2AO43633 222 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 LIMCH1Q9UPQ0 1083 aa7.14□□□□□ -1.27
VCAN-203ENST00000343200 RLBP1P12271 317 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 NBPF8Q3BBV2 869 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 PRR16Q569H4 304 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 CNPY4Q8N129 248 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 RFC1P35251 1148 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 CKAP4Q07065 602 aaKnown RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 PUS7Q96PZ0 661 aaKnown RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 CTAGE9A4FU28 777 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 PDE1CQ14123 709 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 PLIN1O60240 522 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 FOSBP53539 338 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 CCDC97Q96F63 343 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 DRC1Q96MC2 740 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 SPATA32Q96LK8 384 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 POLA1P09884 1462 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 PIP4K2BP78356 416 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 HLTFQ14527 1009 aaKnown RBP eCLIP7.13□□□□□ -1.27
VCAN-203ENST00000343200 KRBA2Q6ZNG9 492 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 CCDC150Q8NCX0 1101 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 ZBTB12Q9Y330 459 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 A0A1W2PRG0 241 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 SAMD15Q9P1V8 674 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 PAK3O75914 559 aaPredicted RBP7.13□□□□□ -1.27
VCAN-203ENST00000343200 MIER3Q7Z3K6 550 aa7.13□□□□□ -1.27
VCAN-203ENST00000343200 CACNA1CQ13936 2221 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 SCAPERQ9BY12 1400 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 TUBBP07437 444 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 PAFAH1B1P43034 410 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 MXRA7P84157 204 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 MVPQ14764 893 aaKnown RBP7.12□□□□□ -1.27
VCAN-203ENST00000343200 CCDC178Q5BJE1 867 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CCDC65Q8IXS2 484 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 C9orf78Q9NZ63 289 aaPredicted RBP7.12□□□□□ -1.27
VCAN-203ENST00000343200 PFDN1O60925 122 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 POTEJP0CG39 1038 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 SPTBP11277 2137 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CCDC30Q5VVM6 783 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CCDC155Q8N6L0 562 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CCDC18Q5T9S5 1454 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 FLIIQ13045 1269 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 LRRC23Q53EV4 343 aaPredicted RBP7.12□□□□□ -1.27
VCAN-203ENST00000343200 NBPF11Q86T75 865 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 SEPT10Q9P0V9 454 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 MTUS1Q9ULD2 1270 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 UACAQ9BZF9 1416 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 FAM76AQ8TAV0 307 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 MACROD2A1Z1Q3 448 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CDKL5O76039 1030 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 NUTM1Q86Y26 1132 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CTNNBL1Q8WYA6 563 aaPredicted RBP7.12□□□□□ -1.27
VCAN-203ENST00000343200 GBP5Q96PP8 586 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 BACH2Q9BYV9 841 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CFDP1Q9UEE9 299 aaPredicted RBP7.12□□□□□ -1.27
VCAN-203ENST00000343200 RASAL2Q9UJF2 1139 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CTAGE5O15320 804 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 PPP1R14CQ8TAE6 165 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 WHAMMQ8TF30 809 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 USP6NLQ92738 828 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 TERF2IPQ9NYB0 399 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 CDK5RAP2Q96SN8 1893 aa7.12□□□□□ -1.27
VCAN-203ENST00000343200 ATAD2Q6PL18 1390 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms