RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 WDR70Q9NW82 654 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 MIA3Q5JRA6 1907 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 FGD6Q6ZV73 1430 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 PRR29P0C7W0 189 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 HOMER1Q86YM7 354 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 ERLEC1Q96DZ1 483 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 ZNF622Q969S3 477 aaKnown RBP eCLIP4.2□□□□□ -1.74
SYNE1-201ENST00000341594 LAMC3Q9Y6N6 1575 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 E2F4Q16254 413 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 TRPM1Q7Z4N2 1603 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 ATP8B1O43520 1251 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 RNF187Q5TA31 235 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-201ENST00000341594 EVI5LQ96CN4 794 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 ADAMTS2O95450 1211 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 MYBBP1AQ9BQG0 1328 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 RAD50Q92878 1312 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 RBM26Q5T8P6 1007 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PPP1R12AO14974 1030 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 TMED8Q6PL24 325 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PLIN2Q99541 437 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 IQGAP2Q13576 1575 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 USP32Q8NFA0 1604 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 SCN5AQ14524 2016 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 SASH1O94885 1247 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 MSL3Q8N5Y2 521 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 GAS2L3Q86XJ1 694 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 SPEF2Q9C093 1822 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 EML3Q32P44 896 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 SPINK5Q9NQ38 1064 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 MYO5BQ9ULV0 1848 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 KDM5CP41229 1560 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 ADRA2BP18089 450 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 ITGB1BP2Q9UKP3 347 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 GIMAP6Q6P9H5 292 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 NUP214P35658 2090 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 TCEANC2Q96MN5 208 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 MAGEC2Q9UBF1 373 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 ARHGEF5Q12774 1597 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 KIF1CO43896 1103 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PHACTR2O75167 634 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 SSBP05455 408 aaKnown RBP eCLIP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 G3BP2Q9UN86 482 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 RBSNQ9H1K0 784 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 NAP1L1P55209 391 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 LLGL1Q15334 1064 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 LMBRD2Q68DH5 695 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 FAM173BQ6P4H8 233 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 FAM47EQ6ZV65 393 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PCMTD1Q96MG8 357 aaPredicted RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 YY1AP1Q9H869 796 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 NOB1Q9ULX3 412 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 DICER1Q9UPY3 1922 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 FERMT3Q86UX7 667 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PAF1Q8N7H5 531 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 TRIM34Q9BYJ4 488 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PLA2R1Q13018 1463 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 GOLGA6L10A6NI86 522 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 ZCCHC17Q9NP64 241 aaKnown RBP4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PPP1R9BQ96SB3 815 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 AMOTL2Q9Y2J4 779 aa4.19□□□□□ -1.74
SYNE1-201ENST00000341594 PTPROQ16827 1216 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 ARID4AP29374 1257 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 TSR2Q969E8 191 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 PPP6R1Q9UPN7 881 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 POLD4Q9HCU8 107 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 CCDC34Q96HJ3 373 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 KIRREL3Q8IZU9 778 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 DNAJC25Q9H1X3 360 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 PPRC1Q5VV67 1664 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 SPHKAPQ2M3C7 1700 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 ARHGAP31Q2M1Z3 1444 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 GADD45BO75293 160 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 HMMRO75330 724 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 BMS1Q14692 1282 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 JAKMIP3Q5VZ66 844 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 PIP4K2AP48426 406 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 ST7Q9NRC1 585 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 SART3Q15020 963 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 SHANK2Q9UPX8 1470 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 CARMIL1Q5VZK9 1371 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 TSPY4P0CV99 314 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 TSPY10P0CW01 314 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 TMEM132EQ6IEE7 984 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 BAZ2AQ9UIF9 1905 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 MPHOSPH10O00566 681 aaKnown RBP4.18□□□□□ -1.74
SYNE1-201ENST00000341594 C10orf67Q8IYJ2 551 aa4.18□□□□□ -1.74
SYNE1-201ENST00000341594 KANK1Q14678 1352 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 GTF2E1P29083 439 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-201ENST00000341594 SMYD5Q6GMV2 418 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 CCDC191Q8NCU4 936 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 IQGAP1P46940 1657 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 CCDC181Q5TID7 509 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 RRP12Q5JTH9 1297 aaKnown RBP4.17□□□□□ -1.74
SYNE1-201ENST00000341594 ZNF646O15015 1829 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-201ENST00000341594 ASXL2Q76L83 1435 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 FILIP1Q7Z7B0 1213 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 PIKFYVEQ9Y2I7 2098 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 DOCK2Q92608 1830 aa4.17□□□□□ -1.74
SYNE1-201ENST00000341594 CCAR1Q8IX12 1150 aaKnown RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms