RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 MSL1Q68DK7 614 aa27.15■■□□□ 1.94
SYNE2-201ENST00000341472 KLHL34Q8N239 644 aa27.15■■□□□ 1.94
SYNE2-201ENST00000341472 TOGARAM1Q9Y4F4 1720 aa27.14■■□□□ 1.94
SYNE2-201ENST00000341472 PHF14O94880 888 aa27.14■■□□□ 1.94
SYNE2-201ENST00000341472 KDM6AO15550 1401 aaPredicted RBP27.14■■□□□ 1.93
SYNE2-201ENST00000341472 SMIM5Q71RC9 77 aa27.13■■□□□ 1.93
SYNE2-201ENST00000341472 AMIGO3Q86WK7 504 aa27.13■■□□□ 1.93
SYNE2-201ENST00000341472 CFAP53Q96M91 514 aa27.13■■□□□ 1.93
SYNE2-201ENST00000341472 GNPATO15228 680 aa27.12■■□□□ 1.93
SYNE2-201ENST00000341472 SSFA2P28290 1259 aa27.12■■□□□ 1.93
SYNE2-201ENST00000341472 MTHFSDQ2M296 383 aaKnown RBP27.12■■□□□ 1.93
SYNE2-201ENST00000341472 SLC4A9Q96Q91 983 aa27.12■■□□□ 1.93
SYNE2-201ENST00000341472 LGR6Q9HBX8 967 aa27.12■■□□□ 1.93
SYNE2-201ENST00000341472 MAP3K5Q99683 1374 aa27.11■■□□□ 1.93
SYNE2-201ENST00000341472 PTCD1O75127 700 aaKnown RBP27.1■■□□□ 1.93
SYNE2-201ENST00000341472 YY1P25490 414 aa27.09■■□□□ 1.93
SYNE2-201ENST00000341472 ITGB4P16144 1822 aa27.09■■□□□ 1.93
SYNE2-201ENST00000341472 RNMTO43148 476 aaKnown RBP27.08■■□□□ 1.93
SYNE2-201ENST00000341472 PPP2R1AP30153 589 aa27.08■■□□□ 1.93
SYNE2-201ENST00000341472 RC3H1Q5TC82 1133 aaKnown RBP27.08■■□□□ 1.93
SYNE2-201ENST00000341472 TRAPPC3LQ5T215 181 aa27.07■■□□□ 1.92
SYNE2-201ENST00000341472 SLC52A2Q9HAB3 445 aa27.07■■□□□ 1.92
SYNE2-201ENST00000341472 NUDCQ9Y266 331 aa27.07■■□□□ 1.92
SYNE2-201ENST00000341472 RTCBQ9Y3I0 505 aaKnown RBP27.07■■□□□ 1.92
SYNE2-201ENST00000341472 GPR162Q16538 588 aa27.04■■□□□ 1.92
SYNE2-201ENST00000341472 QSER1Q2KHR3 1735 aa27.04■■□□□ 1.92
SYNE2-201ENST00000341472 GAS2L2Q8NHY3 880 aa27.03■■□□□ 1.92
SYNE2-201ENST00000341472 C4BP0C0L5 1744 aa27.02■■□□□ 1.92
SYNE2-201ENST00000341472 RPS6KA4O75676 772 aa27.02■■□□□ 1.92
SYNE2-201ENST00000341472 NLGN2Q8NFZ4 835 aa27.02■■□□□ 1.92
SYNE2-201ENST00000341472 C5P01031 1676 aa27.01■■□□□ 1.92
SYNE2-201ENST00000341472 CNTNAP4Q9C0A0 1308 aa27.01■■□□□ 1.91
SYNE2-201ENST00000341472 CD2APQ9Y5K6 639 aa27.01■■□□□ 1.91
SYNE2-201ENST00000341472 COL3A1P02461 1466 aaPredicted RBP27■■□□□ 1.91
SYNE2-201ENST00000341472 ADRA2BP18089 450 aa27■■□□□ 1.91
SYNE2-201ENST00000341472 U2AF1L5P0DN76 240 aaPredicted RBP26.99■■□□□ 1.91
SYNE2-201ENST00000341472 U2AF1Q01081 240 aaKnown RBP eCLIP26.99■■□□□ 1.91
SYNE2-201ENST00000341472 SLC39A6Q13433 755 aa26.99■■□□□ 1.91
SYNE2-201ENST00000341472 ARHGEF1Q92888 912 aaKnown RBP26.99■■□□□ 1.91
SYNE2-201ENST00000341472 GNAT3A8MTJ3 354 aa26.98■■□□□ 1.91
SYNE2-201ENST00000341472 RFC4P35249 363 aa26.98■■□□□ 1.91
SYNE2-201ENST00000341472 PELP1Q8IZL8 1130 aaKnown RBP26.98■■□□□ 1.91
SYNE2-201ENST00000341472 PRKAR2BP31323 418 aa26.97■■□□□ 1.91
SYNE2-201ENST00000341472 CRKLP46109 303 aaKnown RBP26.97■■□□□ 1.91
SYNE2-201ENST00000341472 NLGN1Q8N2Q7 840 aa26.97■■□□□ 1.91
SYNE2-201ENST00000341472 RSPH6AQ9H0K4 717 aa26.97■■□□□ 1.91
SYNE2-201ENST00000341472 TUBGCP6Q96RT7 1819 aa26.96■■□□□ 1.91
SYNE2-201ENST00000341472 IL17REQ8NFR9 667 aa26.96■■□□□ 1.91
SYNE2-201ENST00000341472 PHACTR3Q96KR7 559 aa26.96■■□□□ 1.91
SYNE2-201ENST00000341472 DNAJC10Q8IXB1 793 aa26.95■■□□□ 1.9
SYNE2-201ENST00000341472 FCHSD2O94868 740 aa26.94■■□□□ 1.9
SYNE2-201ENST00000341472 TEFQ10587 303 aa26.94■■□□□ 1.9
SYNE2-201ENST00000341472 TAF1LQ8IZX4 1826 aa26.94■■□□□ 1.9
SYNE2-201ENST00000341472 MMP10P09238 476 aa26.93■■□□□ 1.9
SYNE2-201ENST00000341472 INTS5Q6P9B9 1019 aaKnown RBP26.93■■□□□ 1.9
SYNE2-201ENST00000341472 TTC5Q8N0Z6 440 aa26.91■■□□□ 1.9
SYNE2-201ENST00000341472 COL24A1Q17RW2 1714 aa26.9■■□□□ 1.9
SYNE2-201ENST00000341472 GRIN3BO60391 1043 aa26.9■■□□□ 1.9
SYNE2-201ENST00000341472 VSIG10Q8N0Z9 540 aa26.9■■□□□ 1.9
SYNE2-201ENST00000341472 CCDC87Q9NVE4 849 aa26.9■■□□□ 1.9
SYNE2-201ENST00000341472 CYP19A1P11511 503 aaPredicted RBP26.89■■□□□ 1.9
SYNE2-201ENST00000341472 GYS1P13807 737 aa26.89■■□□□ 1.9
SYNE2-201ENST00000341472 YBX3P16989 372 aaKnown RBP eCLIP26.86■■□□□ 1.89
SYNE2-201ENST00000341472 DDX10Q13206 875 aaKnown RBP26.86■■□□□ 1.89
SYNE2-201ENST00000341472 UBR3Q6ZT12 1888 aa26.86■■□□□ 1.89
SYNE2-201ENST00000341472 RTF1Q92541 710 aaKnown RBP26.86■■□□□ 1.89
SYNE2-201ENST00000341472 ZNF790Q6PG37 636 aa26.85■■□□□ 1.89
SYNE2-201ENST00000341472 SRP68Q9UHB9 627 aaKnown RBP26.85■■□□□ 1.89
SYNE2-201ENST00000341472 STARD3NLO95772 234 aa26.84■■□□□ 1.89
SYNE2-201ENST00000341472 PARP3Q9Y6F1 533 aa26.84■■□□□ 1.89
SYNE2-201ENST00000341472 MRC1P22897 1456 aa26.84■■□□□ 1.89
SYNE2-201ENST00000341472 ZNF831Q5JPB2 1677 aa26.83■■□□□ 1.89
SYNE2-201ENST00000341472 ZNF496Q96IT1 587 aaPredicted RBP26.83■■□□□ 1.89
SYNE2-201ENST00000341472 UTRNP46939 3433 aa26.83■■□□□ 1.89
SYNE2-201ENST00000341472 BTBD11A6QL63 1104 aa26.82■■□□□ 1.88
SYNE2-201ENST00000341472 ZPR1O75312 459 aa26.82■■□□□ 1.88
SYNE2-201ENST00000341472 NEFMP07197 916 aa26.82■■□□□ 1.88
SYNE2-201ENST00000341472 RALBP1Q15311 655 aa26.82■■□□□ 1.88
SYNE2-201ENST00000341472 TEX13AQ9BXU3 409 aaPredicted RBP26.82■■□□□ 1.88
SYNE2-201ENST00000341472 SCN11AQ9UI33 1791 aa26.81■■□□□ 1.88
SYNE2-201ENST00000341472 HTATSF1O43719 755 aaKnown RBP26.81■■□□□ 1.88
SYNE2-201ENST00000341472 FKBP8Q14318 412 aa26.81■■□□□ 1.88
SYNE2-201ENST00000341472 SOS1Q07889 1333 aaPredicted RBP26.81■■□□□ 1.88
SYNE2-201ENST00000341472 USP42Q9H9J4 1324 aaKnown RBP26.81■■□□□ 1.88
SYNE2-201ENST00000341472 CEMIPQ8WUJ3 1361 aa26.81■■□□□ 1.88
SYNE2-201ENST00000341472 FMNL2Q96PY5 1086 aa26.8■■□□□ 1.88
SYNE2-201ENST00000341472 ZBTB1Q9Y2K1 713 aa26.8■■□□□ 1.88
SYNE2-201ENST00000341472 CANXP27824 592 aaKnown RBP26.79■■□□□ 1.88
SYNE2-201ENST00000341472 MCM10Q7L590 875 aa26.79■■□□□ 1.88
SYNE2-201ENST00000341472 ZNF784Q8NCA9 323 aaPredicted RBP26.79■■□□□ 1.88
SYNE2-201ENST00000341472 TGFB2P61812 414 aa26.78■■□□□ 1.88
SYNE2-201ENST00000341472 USPL1Q5W0Q7 1092 aa26.78■■□□□ 1.88
SYNE2-201ENST00000341472 KCNQ3O43525 872 aa26.77■■□□□ 1.88
SYNE2-201ENST00000341472 PNNQ9H307 717 aaKnown RBP26.77■■□□□ 1.88
SYNE2-201ENST00000341472 NARFQ9UHQ1 456 aa26.77■■□□□ 1.88
SYNE2-201ENST00000341472 KCPQ6ZWJ8 1503 aa26.76■■□□□ 1.87
SYNE2-201ENST00000341472 HEG1Q9ULI3 1381 aa26.76■■□□□ 1.87
SYNE2-201ENST00000341472 DCTN1Q14203 1278 aa26.76■■□□□ 1.87
SYNE2-201ENST00000341472 WWC3Q9ULE0 1092 aa26.76■■□□□ 1.87
SYNE2-201ENST00000341472 TM4SF1P30408 202 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms