RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 IFNL2Q8IZJ0 200 aa16.94■□□□□ 0.3
TPM3-204ENST00000323144 ASAP1Q9ULH1 1129 aa16.94■□□□□ 0.3
TPM3-204ENST00000323144 UBR2Q8IWV8 1755 aa16.93■□□□□ 0.3
TPM3-204ENST00000323144 LOC102724428A0A0B4J2F2 783 aa16.93■□□□□ 0.3
TPM3-204ENST00000323144 SIK1P57059 783 aa16.93■□□□□ 0.3
TPM3-204ENST00000323144 AMER1Q5JTC6 1135 aaPredicted RBP16.93■□□□□ 0.3
TPM3-204ENST00000323144 SMARCC1Q92922 1105 aaPredicted RBP16.93■□□□□ 0.3
TPM3-204ENST00000323144 AK7Q96M32 723 aa16.93■□□□□ 0.3
TPM3-204ENST00000323144 N4BP2Q86UW6 1770 aaPredicted RBP16.92■□□□□ 0.3
TPM3-204ENST00000323144 ZNF530Q6P9A1 599 aaPredicted RBP16.91■□□□□ 0.3
TPM3-204ENST00000323144 SIPA1L3O60292 1781 aaPredicted RBP16.91■□□□□ 0.3
TPM3-204ENST00000323144 PELP1Q8IZL8 1130 aaKnown RBP16.9■□□□□ 0.3
TPM3-204ENST00000323144 ATG3Q9NT62 314 aa16.9■□□□□ 0.3
TPM3-204ENST00000323144 KNSTRNQ9Y448 316 aa16.9■□□□□ 0.3
TPM3-204ENST00000323144 BRCA1P38398 1863 aaKnown RBP16.9■□□□□ 0.3
TPM3-204ENST00000323144 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.89■□□□□ 0.29
TPM3-204ENST00000323144 KCPQ6ZWJ8 1503 aa16.88■□□□□ 0.29
TPM3-204ENST00000323144 GNPATO15228 680 aa16.88■□□□□ 0.29
TPM3-204ENST00000323144 YBX3P16989 372 aaKnown RBP eCLIP16.88■□□□□ 0.29
TPM3-204ENST00000323144 GPR162Q16538 588 aa16.88■□□□□ 0.29
TPM3-204ENST00000323144 ZNF784Q8NCA9 323 aaPredicted RBP16.88■□□□□ 0.29
TPM3-204ENST00000323144 SLC4A9Q96Q91 983 aa16.88■□□□□ 0.29
TPM3-204ENST00000323144 IL13P35225 146 aa16.87■□□□□ 0.29
TPM3-204ENST00000323144 SULT6B1Q6IMI4 303 aa16.87■□□□□ 0.29
TPM3-204ENST00000323144 SSFA2P28290 1259 aa16.86■□□□□ 0.29
TPM3-204ENST00000323144 ATP6V1AP38606 617 aa16.86■□□□□ 0.29
TPM3-204ENST00000323144 PLEKHO1Q53GL0 409 aaPredicted RBP16.85■□□□□ 0.29
TPM3-204ENST00000323144 FLAD1Q8NFF5 587 aa16.85■□□□□ 0.29
TPM3-204ENST00000323144 DCAF5Q96JK2 942 aa16.85■□□□□ 0.29
TPM3-204ENST00000323144 CC2D1BQ5T0F9 858 aaKnown RBP16.84■□□□□ 0.29
TPM3-204ENST00000323144 PXDNLA1KZ92 1463 aa16.84■□□□□ 0.29
TPM3-204ENST00000323144 ERVV-2B6SEH9 535 aa16.83■□□□□ 0.28
TPM3-204ENST00000323144 HSP90AB1P08238 724 aaKnown RBP16.83■□□□□ 0.28
TPM3-204ENST00000323144 SCN7AQ01118 1682 aa16.83■□□□□ 0.28
TPM3-204ENST00000323144 AMOTQ4VCS5 1084 aa16.83■□□□□ 0.28
TPM3-204ENST00000323144 C10orf71Q711Q0 1435 aa16.83■□□□□ 0.28
TPM3-204ENST00000323144 RBM42Q9BTD8 480 aaKnown RBP16.83■□□□□ 0.28
TPM3-204ENST00000323144 CNTNAP4Q9C0A0 1308 aa16.82■□□□□ 0.28
TPM3-204ENST00000323144 PER1O15534 1290 aaPredicted RBP16.82■□□□□ 0.28
TPM3-204ENST00000323144 MTHFSP49914 203 aa16.82■□□□□ 0.28
TPM3-204ENST00000323144 C1orf141Q5JVX7 400 aa16.82■□□□□ 0.28
TPM3-204ENST00000323144 WWC3Q9ULE0 1092 aa16.82■□□□□ 0.28
TPM3-204ENST00000323144 HMOX1P09601 288 aa16.81■□□□□ 0.28
TPM3-204ENST00000323144 CABP4P57796 275 aa16.81■□□□□ 0.28
TPM3-204ENST00000323144 CNGB1Q14028 1251 aaPredicted RBP16.81■□□□□ 0.28
TPM3-204ENST00000323144 AFDNP55196 1824 aaKnown RBP16.8■□□□□ 0.28
TPM3-204ENST00000323144 NPC1L1Q9UHC9 1359 aa16.79■□□□□ 0.28
TPM3-204ENST00000323144 CD2APQ9Y5K6 639 aa16.79■□□□□ 0.28
TPM3-204ENST00000323144 ARFGEF1Q9Y6D6 1849 aa16.79■□□□□ 0.28
TPM3-204ENST00000323144 DLEC1Q9Y238 1755 aa16.79■□□□□ 0.28
TPM3-204ENST00000323144 PTCD1O75127 700 aaKnown RBP16.78■□□□□ 0.28
TPM3-204ENST00000323144 ADCY9O60503 1353 aa16.77■□□□□ 0.28
TPM3-204ENST00000323144 NRXN2Q9P2S2 1712 aa16.77■□□□□ 0.28
TPM3-204ENST00000323144 MMP10P09238 476 aa16.77■□□□□ 0.28
TPM3-204ENST00000323144 HMGB2P26583 209 aaKnown RBP16.77■□□□□ 0.28
TPM3-204ENST00000323144 ATP10DQ9P241 1426 aa16.77■□□□□ 0.27
TPM3-204ENST00000323144 BCORQ6W2J9 1755 aa16.77■□□□□ 0.27
TPM3-204ENST00000323144 NFATC2IPQ8NCF5 419 aa16.76■□□□□ 0.27
TPM3-204ENST00000323144 RTCBQ9Y3I0 505 aaKnown RBP16.76■□□□□ 0.27
TPM3-204ENST00000323144 DIAPH1O60610 1272 aaKnown RBP16.75■□□□□ 0.27
TPM3-204ENST00000323144 CRKLP46109 303 aaKnown RBP16.75■□□□□ 0.27
TPM3-204ENST00000323144 AKAP4Q5JQC9 854 aa16.75■□□□□ 0.27
TPM3-204ENST00000323144 GYS1P13807 737 aa16.74■□□□□ 0.27
TPM3-204ENST00000323144 MTHFSDQ2M296 383 aaKnown RBP16.74■□□□□ 0.27
TPM3-204ENST00000323144 ARHGEF1Q92888 912 aaKnown RBP16.74■□□□□ 0.27
TPM3-204ENST00000323144 SLC52A2Q9HAB3 445 aa16.74■□□□□ 0.27
TPM3-204ENST00000323144 LGR6Q9HBX8 967 aa16.74■□□□□ 0.27
TPM3-204ENST00000323144 COL11A2P13942 1736 aaPredicted RBP16.73■□□□□ 0.27
TPM3-204ENST00000323144 DLG5Q8TDM6 1919 aa16.73■□□□□ 0.27
TPM3-204ENST00000323144 RNMTO43148 476 aaKnown RBP16.73■□□□□ 0.27
TPM3-204ENST00000323144 RC3H1Q5TC82 1133 aaKnown RBP16.73■□□□□ 0.27
TPM3-204ENST00000323144 SRP68Q9UHB9 627 aaKnown RBP16.73■□□□□ 0.27
TPM3-204ENST00000323144 LAMB4A4D0S4 1761 aa16.72■□□□□ 0.27
TPM3-204ENST00000323144 RPS6KA4O75676 772 aa16.72■□□□□ 0.27
TPM3-204ENST00000323144 ADRA2BP18089 450 aa16.72■□□□□ 0.27
TPM3-204ENST00000323144 SLC39A6Q13433 755 aa16.72■□□□□ 0.27
TPM3-204ENST00000323144 USP42Q9H9J4 1324 aaKnown RBP16.71■□□□□ 0.27
TPM3-204ENST00000323144 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
TPM3-204ENST00000323144 GRIN3BO60391 1043 aa16.71■□□□□ 0.27
TPM3-204ENST00000323144 TRAPPC3LQ5T215 181 aa16.71■□□□□ 0.27
TPM3-204ENST00000323144 DNAJC10Q8IXB1 793 aa16.71■□□□□ 0.27
TPM3-204ENST00000323144 COL15A1P39059 1388 aa16.7■□□□□ 0.26
TPM3-204ENST00000323144 U2SURPO15042 1029 aaKnown RBP16.7■□□□□ 0.26
TPM3-204ENST00000323144 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
TPM3-204ENST00000323144 CACNA1SQ13698 1873 aa16.69■□□□□ 0.26
TPM3-204ENST00000323144 RFC4P35249 363 aa16.69■□□□□ 0.26
TPM3-204ENST00000323144 DDR1Q08345 913 aa16.69■□□□□ 0.26
TPM3-204ENST00000323144 INTS5Q6P9B9 1019 aaKnown RBP16.69■□□□□ 0.26
TPM3-204ENST00000323144 TIAM2Q8IVF5 1701 aa16.69■□□□□ 0.26
TPM3-204ENST00000323144 KDM3BQ7LBC6 1761 aa16.68■□□□□ 0.26
TPM3-204ENST00000323144 GIGYF1O75420 1035 aaPredicted RBP16.67■□□□□ 0.26
TPM3-204ENST00000323144 FKBP8Q14318 412 aa16.67■□□□□ 0.26
TPM3-204ENST00000323144 CCDC87Q9NVE4 849 aa16.67■□□□□ 0.26
TPM3-204ENST00000323144 ZBTB1Q9Y2K1 713 aa16.67■□□□□ 0.26
TPM3-204ENST00000323144 C1QTNF8P60827 252 aa16.66■□□□□ 0.26
TPM3-204ENST00000323144 NLGN1Q8N2Q7 840 aa16.66■□□□□ 0.26
TPM3-204ENST00000323144 CYP19A1P11511 503 aaPredicted RBP16.65■□□□□ 0.26
TPM3-204ENST00000323144 CARMIL3Q8ND23 1372 aa16.64■□□□□ 0.26
TPM3-204ENST00000323144 CEMIPQ8WUJ3 1361 aa16.64■□□□□ 0.26
TPM3-204ENST00000323144 SENP3-EIF4A1A0A087X0R7 540 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms