RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 HYPKQ9NX55 129 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 GOLGA6L4A6NEF3 574 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 G3V3G9 751 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 STARD3NLO95772 234 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 DCAF8Q5TAQ9 597 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 AACSQ86V21 672 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 CNTROBQ8N137 903 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 ZNF521Q96K83 1311 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 ZKSCAN1P17029 563 aaPredicted RBP11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 PHAXQ9H814 394 aaKnown RBP11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 NEXMIFQ5QGS0 1516 aa11.32□□□□□ -0.6
TMEM39A-201ENST00000319172 PIK3R4Q99570 1358 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 RNMTO43148 476 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 SNRPA1P09661 255 aaKnown RBP11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 TSHZ3Q63HK5 1081 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 AGLP35573 1532 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 TOM1O60784 492 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 ERC1Q8IUD2 1116 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 BTG4Q9NY30 223 aa11.31□□□□□ -0.6
TMEM39A-201ENST00000319172 APPP05067 770 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 COPS6Q7L5N1 327 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 XAGE3Q8WTP9 111 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 AATKQ6ZMQ8 1374 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 A0A087WZG4 1122 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 IL2RBP14784 551 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 ZBTB40Q9NUA8 1239 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 LMTK3Q96Q04 1460 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 PPP1R42Q7Z4L9 355 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 VPS37DQ86XT2 251 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 WASHC4Q2M389 1173 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 BICDL1Q6ZP65 573 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 IL17REQ8NFR9 667 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 CNNM1Q9NRU3 951 aa11.3□□□□□ -0.6
TMEM39A-201ENST00000319172 TULP4Q9NRJ4 1543 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 GPTP24298 496 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 HDAC1Q13547 482 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 CCDC57Q2TAC2 916 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 UBE3BQ7Z3V4 1068 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 ZNF335Q9H4Z2 1342 aaPredicted RBP11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 ZRSR1Q15695 479 aaKnown RBP11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 ACSBG1Q96GR2 724 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 PIK3C2BO00750 1634 aa11.29□□□□□ -0.6
TMEM39A-201ENST00000319172 MX1P20591 662 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 NEK4P51957 841 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 ANKRD13DQ6ZTN6 518 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 TRMT2AQ8IZ69 625 aaKnown RBP11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 KIF1BPQ96EK5 621 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 VWDEQ8N2E2 1590 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 SETBP1Q9Y6X0 1596 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 ARHGEF40Q8TER5 1519 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 KCNQ3O43525 872 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 TRIM44Q96DX7 344 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 C8orf37Q96NL8 207 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 PTPRMP28827 1452 aa11.28□□□□□ -0.6
TMEM39A-201ENST00000319172 CWF19L2Q2TBE0 894 aaKnown RBP11.27□□□□□ -0.6
TMEM39A-201ENST00000319172 DCAF5Q96JK2 942 aa11.27□□□□□ -0.6
TMEM39A-201ENST00000319172 CCDC8Q9H0W5 538 aaPredicted RBP11.27□□□□□ -0.6
TMEM39A-201ENST00000319172 ARHGEF10O15013 1369 aa11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 QRICH2Q9H0J4 1663 aa11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 ARHGEF25Q86VW2 580 aa11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 C16orf71Q8IYS4 520 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 ZBTB7BO15156 539 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 CDK11BP21127 795 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 GNL2Q13823 731 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 LRRFIP1Q32MZ4 808 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 CWC27Q6UX04 472 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 ANKRD44Q8N8A2 993 aa11.27□□□□□ -0.61
TMEM39A-201ENST00000319172 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 CHMP5Q9NZZ3 219 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 CEP126Q9P2H0 1117 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 NUCB1Q02818 461 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 RNF20Q5VTR2 975 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 ZNF790Q6PG37 636 aa11.26□□□□□ -0.61
TMEM39A-201ENST00000319172 KSR2Q6VAB6 950 aa11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 BOLA2Q9H3K6 86 aa11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 ADAMTS13Q76LX8 1427 aa11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 IGSF1Q8N6C5 1336 aa11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 MROH1Q8NDA8 1641 aa11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 FKBP4Q02790 459 aaKnown RBP eCLIP11.25□□□□□ -0.61
TMEM39A-201ENST00000319172 PTMAP06454 111 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 DDB1Q16531 1140 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 CEP85Q6P2H3 762 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 MPHOSPH8Q99549 860 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 DEPDC5O75140 1603 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 NRXN1Q9ULB1 1477 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 NFKBIBQ15653 356 aa11.24□□□□□ -0.61
TMEM39A-201ENST00000319172 RAB11FIP3O75154 756 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 TRMT112Q9UI30 125 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 ADGRB1O14514 1584 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 USP19O94966 1318 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 KIAA0232Q92628 1395 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 CCDC158Q5M9N0 1113 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 TTC39AQ5SRH9 613 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 ZNF496Q96IT1 587 aaPredicted RBP11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 PREX1Q8TCU6 1659 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 SMC5Q8IY18 1101 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 PA2G4Q9UQ80 394 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 GRM8O00222 908 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 RABEP1Q15276 862 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms