RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SCN11AQ9UI33 1791 aa23.75■■□□□ 1.39
HMGA1-201ENST00000311487 ERVV-2B6SEH9 535 aa23.74■■□□□ 1.39
HMGA1-201ENST00000311487 CCDC27Q2M243 656 aa23.74■■□□□ 1.39
HMGA1-201ENST00000311487 TSR2Q969E8 191 aaKnown RBP23.74■■□□□ 1.39
HMGA1-201ENST00000311487 ASAP1Q9ULH1 1129 aa23.74■■□□□ 1.39
HMGA1-201ENST00000311487 BTBD11A6QL63 1104 aa23.73■■□□□ 1.39
HMGA1-201ENST00000311487 ZNF521Q96K83 1311 aa23.72■■□□□ 1.39
HMGA1-201ENST00000311487 TAF7Q15545 349 aaPredicted RBP23.72■■□□□ 1.39
HMGA1-201ENST00000311487 ITGB4P16144 1822 aa23.71■■□□□ 1.39
HMGA1-201ENST00000311487 TSPYL4Q9UJ04 414 aa23.7■■□□□ 1.38
HMGA1-201ENST00000311487 PTCD1O75127 700 aaKnown RBP23.69■■□□□ 1.38
HMGA1-201ENST00000311487 KCNQ4P56696 695 aa23.69■■□□□ 1.38
HMGA1-201ENST00000311487 GOLGA2Q08379 1002 aa23.69■■□□□ 1.38
HMGA1-201ENST00000311487 KRT24Q2M2I5 525 aa23.69■■□□□ 1.38
HMGA1-201ENST00000311487 MBIPQ9NS73 344 aa23.69■■□□□ 1.38
HMGA1-201ENST00000311487 BCL9O00512 1426 aa23.68■■□□□ 1.38
HMGA1-201ENST00000311487 ADAMTS7Q9UKP4 1686 aa23.68■■□□□ 1.38
HMGA1-201ENST00000311487 ATG3Q9NT62 314 aa23.68■■□□□ 1.38
HMGA1-201ENST00000311487 SBF2Q86WG5 1849 aa23.68■■□□□ 1.38
HMGA1-201ENST00000311487 ZBED9Q6R2W3 1325 aa23.68■■□□□ 1.38
HMGA1-201ENST00000311487 WDR63Q8IWG1 891 aa23.67■■□□□ 1.38
HMGA1-201ENST00000311487 BCL11BQ9C0K0 894 aaPredicted RBP23.67■■□□□ 1.38
HMGA1-201ENST00000311487 CFAP44Q96MT7 982 aa23.67■■□□□ 1.38
HMGA1-201ENST00000311487 ELL2O00472 640 aaPredicted RBP23.65■■□□□ 1.38
HMGA1-201ENST00000311487 CHL1O00533 1208 aa23.65■■□□□ 1.38
HMGA1-201ENST00000311487 APBA3O96018 575 aa23.65■■□□□ 1.38
HMGA1-201ENST00000311487 RBM42Q9BTD8 480 aaKnown RBP23.65■■□□□ 1.38
HMGA1-201ENST00000311487 ZNF790Q6PG37 636 aa23.65■■□□□ 1.38
HMGA1-201ENST00000311487 NGEFQ8N5V2 710 aa23.65■■□□□ 1.38
HMGA1-201ENST00000311487 MRC1P22897 1456 aa23.64■■□□□ 1.37
HMGA1-201ENST00000311487 ZNF853P0CG23 659 aa23.64■■□□□ 1.37
HMGA1-201ENST00000311487 IFT57Q9NWB7 429 aa23.64■■□□□ 1.37
HMGA1-201ENST00000311487 PRAMEF22A3QJZ6 481 aa23.63■■□□□ 1.37
HMGA1-201ENST00000311487 GNAI1P63096 354 aa23.63■■□□□ 1.37
HMGA1-201ENST00000311487 CALD1Q05682 793 aaKnown RBP23.63■■□□□ 1.37
HMGA1-201ENST00000311487 TTC5Q8N0Z6 440 aa23.63■■□□□ 1.37
HMGA1-201ENST00000311487 SIPA1L3O60292 1781 aaPredicted RBP23.63■■□□□ 1.37
HMGA1-201ENST00000311487 NCBP3Q53F19 620 aaKnown RBP23.63■■□□□ 1.37
HMGA1-201ENST00000311487 ZNF496Q96IT1 587 aaPredicted RBP23.63■■□□□ 1.37
HMGA1-201ENST00000311487 NHSQ6T4R5 1651 aa23.62■■□□□ 1.37
HMGA1-201ENST00000311487 FANCIQ9NVI1 1328 aa23.62■■□□□ 1.37
HMGA1-201ENST00000311487 SLFN5Q08AF3 891 aa23.62■■□□□ 1.37
HMGA1-201ENST00000311487 BTAF1O14981 1849 aa23.62■■□□□ 1.37
HMGA1-201ENST00000311487 PALLDQ8WX93 1383 aa23.6■■□□□ 1.37
HMGA1-201ENST00000311487 DEFB132Q7Z7B7 95 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 E9PSI1 815 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 TSPYL6Q8N831 410 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 C8orf58Q8NAV2 365 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 NECTIN2Q92692 538 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 SLC4A9Q96Q91 983 aa23.59■■□□□ 1.37
HMGA1-201ENST00000311487 IL16Q14005 1332 aa23.58■■□□□ 1.37
HMGA1-201ENST00000311487 EIF4A1P60842 406 aaKnown RBP23.58■■□□□ 1.37
HMGA1-201ENST00000311487 EN1Q05925 392 aaPredicted RBP23.58■■□□□ 1.37
HMGA1-201ENST00000311487 EXOSC9Q06265 439 aaKnown RBP23.58■■□□□ 1.37
HMGA1-201ENST00000311487 MYH16Q9H6N6 1097 aa23.57■■□□□ 1.36
HMGA1-201ENST00000311487 DUSP27Q5VZP5 1158 aa23.57■■□□□ 1.36
HMGA1-201ENST00000311487 TCERG1O14776 1098 aaKnown RBP23.55■■□□□ 1.36
HMGA1-201ENST00000311487 ATP6V1AP38606 617 aa23.55■■□□□ 1.36
HMGA1-201ENST00000311487 SF3B2Q13435 895 aaKnown RBP23.55■■□□□ 1.36
HMGA1-201ENST00000311487 LOC102724428A0A0B4J2F2 783 aa23.55■■□□□ 1.36
HMGA1-201ENST00000311487 SIK1P57059 783 aa23.55■■□□□ 1.36
HMGA1-201ENST00000311487 FMNL2Q96PY5 1086 aa23.55■■□□□ 1.36
HMGA1-201ENST00000311487 PROM2Q8N271 834 aa23.54■■□□□ 1.36
HMGA1-201ENST00000311487 UPF1Q92900 1129 aaKnown RBP eCLIP23.54■■□□□ 1.367e-23■■■■□ 19.4
HMGA1-201ENST00000311487 KDM3BQ7LBC6 1761 aa23.54■■□□□ 1.36
HMGA1-201ENST00000311487 EIF2S2P20042 333 aaKnown RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 PIP4K2AP48426 406 aaPredicted RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 EZH2Q15910 746 aaKnown RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 KCPQ6ZWJ8 1503 aa23.53■■□□□ 1.36
HMGA1-201ENST00000311487 ITPK1Q13572 414 aa23.53■■□□□ 1.36
HMGA1-201ENST00000311487 TRMT2AQ8IZ69 625 aaKnown RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 SMARCC1Q92922 1105 aaPredicted RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 LRRC4BQ9NT99 713 aa23.53■■□□□ 1.36
HMGA1-201ENST00000311487 CCNL1Q9UK58 526 aaPredicted RBP23.53■■□□□ 1.36
HMGA1-201ENST00000311487 USP16Q9Y5T5 823 aa23.53■■□□□ 1.36
HMGA1-201ENST00000311487 DNAJC10Q8IXB1 793 aa23.52■■□□□ 1.36
HMGA1-201ENST00000311487 TNS1Q9HBL0 1735 aaKnown RBP23.51■■□□□ 1.35
HMGA1-201ENST00000311487 PAPPAQ13219 1627 aa23.51■■□□□ 1.35
HMGA1-201ENST00000311487 GIGYF1O75420 1035 aaPredicted RBP23.51■■□□□ 1.35
HMGA1-201ENST00000311487 BABAM1Q9NWV8 329 aa23.51■■□□□ 1.35
HMGA1-201ENST00000311487 TXNRD1Q16881 649 aa23.5■■□□□ 1.35
HMGA1-201ENST00000311487 HEG1Q9ULI3 1381 aa23.5■■□□□ 1.35
HMGA1-201ENST00000311487 SMIM5Q71RC9 77 aa23.49■■□□□ 1.35
HMGA1-201ENST00000311487 TWISTNBQ3B726 338 aaPredicted RBP23.49■■□□□ 1.35
HMGA1-201ENST00000311487 SNRPA1P09661 255 aaKnown RBP23.48■■□□□ 1.35
HMGA1-201ENST00000311487 UBR2Q8IWV8 1755 aa23.47■■□□□ 1.35
HMGA1-201ENST00000311487 PLSCR1O15162 318 aa23.47■■□□□ 1.35
HMGA1-201ENST00000311487 LINC00116Q8NCU8 138 aa23.47■■□□□ 1.35
HMGA1-201ENST00000311487 CAMKK2Q96RR4 588 aa23.47■■□□□ 1.35
HMGA1-201ENST00000311487 ANXA1P04083 346 aa23.46■■□□□ 1.35
HMGA1-201ENST00000311487 BAG6P46379 1132 aa23.46■■□□□ 1.35
HMGA1-201ENST00000311487 A1BGP04217 495 aa23.45■■□□□ 1.35
HMGA1-201ENST00000311487 BCL2L13Q9BXK5 485 aa23.45■■□□□ 1.35
HMGA1-201ENST00000311487 C5P01031 1676 aa23.45■■□□□ 1.34
HMGA1-201ENST00000311487 VAMP4O75379 141 aa23.45■■□□□ 1.34
HMGA1-201ENST00000311487 ZNF330Q9Y3S2 320 aaPredicted RBP23.44■■□□□ 1.34
HMGA1-201ENST00000311487 HDGFL1Q5TGJ6 251 aa23.43■■□□□ 1.34
HMGA1-201ENST00000311487 LY75O60449 1722 aa23.42■■□□□ 1.34
HMGA1-201ENST00000311487 CYP19A1P11511 503 aaPredicted RBP23.42■■□□□ 1.34
HMGA1-201ENST00000311487 MYL6BP14649 208 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms