RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 NOS1P29475 1434 aa22.75■■□□□ 1.23
USP48-201ENST00000308271 CTAGE5O15320 804 aa22.75■■□□□ 1.23
USP48-201ENST00000308271 ERICH4A6NGS2 130 aa22.75■■□□□ 1.23
USP48-201ENST00000308271 PLEKHO1Q53GL0 409 aaPredicted RBP22.75■■□□□ 1.23
USP48-201ENST00000308271 SHANK2Q9UPX8 1470 aa22.75■■□□□ 1.23
USP48-201ENST00000308271 EIF3JO75822 258 aaKnown RBP22.74■■□□□ 1.23
USP48-201ENST00000308271 PAXBP1Q9Y5B6 917 aa22.74■■□□□ 1.23
USP48-201ENST00000308271 WDR62O43379 1518 aa22.74■■□□□ 1.23
USP48-201ENST00000308271 PSME1Q06323 249 aa22.74■■□□□ 1.23
USP48-201ENST00000308271 EMILIN1Q9Y6C2 1016 aa22.74■■□□□ 1.23
USP48-201ENST00000308271 F6X3S4 739 aa22.74■■□□□ 1.23
USP48-201ENST00000308271 MRPL50Q8N5N7 158 aaKnown RBP22.74■■□□□ 1.23
USP48-201ENST00000308271 ZSCAN22P10073 491 aaPredicted RBP22.73■■□□□ 1.23
USP48-201ENST00000308271 CKAP2LQ8IYA6 745 aa22.73■■□□□ 1.23
USP48-201ENST00000308271 CARD14Q9BXL6 1004 aa22.73■■□□□ 1.23
USP48-201ENST00000308271 CALCOCO1Q9P1Z2 691 aa22.73■■□□□ 1.23
USP48-201ENST00000308271 DACH1Q9UI36 760 aa22.73■■□□□ 1.23
USP48-201ENST00000308271 CCDC94Q9BW85 323 aaPredicted RBP22.72■■□□□ 1.23
USP48-201ENST00000308271 ZNF445P59923 1031 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 RAPGEF4Q8WZA2 1011 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 DCTPP1Q9H773 170 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 GCC2Q8IWJ2 1684 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 NUTM2GQ5VZR2 741 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 MIS18AQ9NYP9 233 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 USP48Q86UV5 1035 aa22.72■■□□□ 1.23
USP48-201ENST00000308271 ZNF830Q96NB3 372 aaPredicted RBP22.72■■□□□ 1.23
USP48-201ENST00000308271 XBP1P17861 261 aa22.71■■□□□ 1.23
USP48-201ENST00000308271 GJB2P29033 226 aa22.71■■□□□ 1.23
USP48-201ENST00000308271 PDE1AP54750 535 aa22.71■■□□□ 1.23
USP48-201ENST00000308271 ZNF165P49910 485 aa22.71■■□□□ 1.23
USP48-201ENST00000308271 SIL1Q9H173 461 aa22.71■■□□□ 1.23
USP48-201ENST00000308271 SPDYE4A6NLX3 237 aa22.7■■□□□ 1.23
USP48-201ENST00000308271 AEBP2Q6ZN18 517 aaPredicted RBP22.7■■□□□ 1.23
USP48-201ENST00000308271 NUDT16Q96DE0 195 aaKnown RBP22.7■■□□□ 1.23
USP48-201ENST00000308271 FAM177A1Q8N128 213 aaPredicted RBP22.7■■□□□ 1.22
USP48-201ENST00000308271 LRRFIP2Q9Y608 721 aaKnown RBP22.7■■□□□ 1.22
USP48-201ENST00000308271 MARCH6O60337 910 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 GIMAP6Q6P9H5 292 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 ESYT1Q9BSJ8 1104 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 TSPYL1Q9H0U9 437 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 ADGRL2O95490 1459 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 CAGE1Q8TC20 777 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 DDX11Q96FC9 970 aa22.7■■□□□ 1.22
USP48-201ENST00000308271 TTLL5Q6EMB2 1281 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 PPFIBP1Q86W92 1011 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 PIP4K2AP48426 406 aaPredicted RBP22.69■■□□□ 1.22
USP48-201ENST00000308271 GSDMDP57764 484 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 RBSNQ9H1K0 784 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 TTC12Q9H892 705 aaPredicted RBP22.69■■□□□ 1.22
USP48-201ENST00000308271 INTS4Q96HW7 963 aaKnown RBP22.69■■□□□ 1.22
USP48-201ENST00000308271 ABTB2Q8N961 1025 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 PUS7Q96PZ0 661 aaKnown RBP22.69■■□□□ 1.22
USP48-201ENST00000308271 DUOX2Q9NRD8 1548 aa22.69■■□□□ 1.22
USP48-201ENST00000308271 GNAT3A8MTJ3 354 aa22.68■■□□□ 1.22
USP48-201ENST00000308271 ZGPATQ8N5A5 531 aaKnown RBP22.68■■□□□ 1.22
USP48-201ENST00000308271 USP26Q9BXU7 913 aa22.68■■□□□ 1.22
USP48-201ENST00000308271 PLEKHM2Q8IWE5 1019 aa22.68■■□□□ 1.22
USP48-201ENST00000308271 FAM200AQ8TCP9 573 aa22.68■■□□□ 1.22
USP48-201ENST00000308271 GTPBP4Q9BZE4 634 aaKnown RBP22.68■■□□□ 1.22
USP48-201ENST00000308271 BRMS1Q9HCU9 246 aa22.68■■□□□ 1.22
USP48-201ENST00000308271 NME9Q86XW9 330 aa22.67■■□□□ 1.22
USP48-201ENST00000308271 SMAP1Q8IYB5 467 aaPredicted RBP22.67■■□□□ 1.22
USP48-201ENST00000308271 DMRT2Q9Y5R5 561 aa22.67■■□□□ 1.22
USP48-201ENST00000308271 ZSCAN12O43309 604 aa22.67■■□□□ 1.22
USP48-201ENST00000308271 CDR1P51861 262 aa22.67■■□□□ 1.22
USP48-201ENST00000308271 SART3Q15020 963 aaKnown RBP22.67■■□□□ 1.22
USP48-201ENST00000308271 H0YHG0 523 aa22.66■■□□□ 1.22
USP48-201ENST00000308271 FLIIQ13045 1269 aa22.66■■□□□ 1.22
USP48-201ENST00000308271 MEIS3Q99687 375 aa22.66■■□□□ 1.22
USP48-201ENST00000308271 VAMP4O75379 141 aa22.66■■□□□ 1.22
USP48-201ENST00000308271 CFAP100Q494V2 611 aa22.66■■□□□ 1.22
USP48-201ENST00000308271 CNPY2Q9Y2B0 182 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.65■■□□□ 1.22
USP48-201ENST00000308271 FYB1O15117 783 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 ATP10BO94823 1461 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 FSD2A1L4K1 749 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 A2MP01023 1474 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 SPG7Q9UQ90 795 aa22.65■■□□□ 1.22
USP48-201ENST00000308271 NCBP3Q53F19 620 aaKnown RBP22.64■■□□□ 1.22
USP48-201ENST00000308271 CEP135Q66GS9 1140 aa22.64■■□□□ 1.22
USP48-201ENST00000308271 C16orf71Q8IYS4 520 aaPredicted RBP22.64■■□□□ 1.22
USP48-201ENST00000308271 LARP6Q9BRS8 491 aaKnown RBP22.64■■□□□ 1.22
USP48-201ENST00000308271 CCDC171Q6TFL3 1326 aa22.64■■□□□ 1.22
USP48-201ENST00000308271 ATP2B1P20020 1258 aa22.64■■□□□ 1.21
USP48-201ENST00000308271 TRMT1Q9NXH9 659 aaKnown RBP22.64■■□□□ 1.21
USP48-201ENST00000308271 TSHZ3Q63HK5 1081 aa22.64■■□□□ 1.21
USP48-201ENST00000308271 CEP89Q96ST8 783 aa22.64■■□□□ 1.21
USP48-201ENST00000308271 TFIP11Q9UBB9 837 aaKnown RBP22.64■■□□□ 1.21
USP48-201ENST00000308271 CTNNA3Q9UI47 895 aa22.64■■□□□ 1.21
USP48-201ENST00000308271 STX1AQ16623 288 aa22.64■■□□□ 1.21
USP48-201ENST00000308271 ZNF530Q6P9A1 599 aaPredicted RBP22.63■■□□□ 1.21
USP48-201ENST00000308271 KRT222Q8N1A0 295 aa22.63■■□□□ 1.21
USP48-201ENST00000308271 DDX54Q8TDD1 881 aaKnown RBP22.63■■□□□ 1.21
USP48-201ENST00000308271 ZBTB7BO15156 539 aaPredicted RBP22.63■■□□□ 1.21
USP48-201ENST00000308271 CLSTN1O94985 981 aa22.63■■□□□ 1.21
USP48-201ENST00000308271 BMS1Q14692 1282 aaKnown RBP22.63■■□□□ 1.21
USP48-201ENST00000308271 AXDND1Q5T1B0 1012 aaPredicted RBP22.63■■□□□ 1.21
USP48-201ENST00000308271 URI1O94763 535 aaPredicted RBP22.62■■□□□ 1.21
USP48-201ENST00000308271 BRPF1P55201 1214 aaPredicted RBP22.62■■□□□ 1.21
USP48-201ENST00000308271 ECHDC1Q9NTX5 307 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms