RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 RGPD3A6NKT7 1758 aaPredicted RBP29.43■■■□□ 2.3
HOXD4-201ENST00000306324 SIPA1L3O60292 1781 aaPredicted RBP29.43■■■□□ 2.3
HOXD4-201ENST00000306324 RGPD4Q7Z3J3 1758 aa29.43■■■□□ 2.3
HOXD4-201ENST00000306324 TEFQ10587 303 aa29.42■■■□□ 2.3
HOXD4-201ENST00000306324 CEMIPQ8WUJ3 1361 aa29.41■■■□□ 2.3
HOXD4-201ENST00000306324 SENP3-EIF4A1A0A087X0R7 540 aa29.41■■■□□ 2.3
HOXD4-201ENST00000306324 PLSCR1O15162 318 aa29.4■■■□□ 2.3
HOXD4-201ENST00000306324 LY75O60449 1722 aa29.4■■■□□ 2.3
HOXD4-201ENST00000306324 LMOD3Q0VAK6 560 aa29.39■■■□□ 2.3
HOXD4-201ENST00000306324 EZH2Q15910 746 aaKnown RBP29.38■■■□□ 2.29
HOXD4-201ENST00000306324 THUMPD2Q9BTF0 503 aaKnown RBP29.37■■■□□ 2.29
HOXD4-201ENST00000306324 ASAP1Q9ULH1 1129 aa29.37■■■□□ 2.29
HOXD4-201ENST00000306324 CAMKK2Q96RR4 588 aa29.36■■■□□ 2.29
HOXD4-201ENST00000306324 PALLDQ8WX93 1383 aa29.35■■■□□ 2.29
HOXD4-201ENST00000306324 SMARCC1Q92922 1105 aaPredicted RBP29.35■■■□□ 2.29
HOXD4-201ENST00000306324 ATG3Q9NT62 314 aa29.35■■■□□ 2.29
HOXD4-201ENST00000306324 RREB1Q92766 1687 aa29.35■■■□□ 2.29
HOXD4-201ENST00000306324 TRIM35Q9UPQ4 493 aa29.34■■■□□ 2.29
HOXD4-201ENST00000306324 PAPPAQ13219 1627 aa29.33■■■□□ 2.29
HOXD4-201ENST00000306324 TXNRD1Q16881 649 aa29.32■■■□□ 2.28
HOXD4-201ENST00000306324 SLC39A6Q13433 755 aa29.31■■■□□ 2.28
HOXD4-201ENST00000306324 NUP188Q5SRE5 1749 aa29.31■■■□□ 2.28
HOXD4-201ENST00000306324 SALL2Q9Y467 1007 aaPredicted RBP29.3■■■□□ 2.28
HOXD4-201ENST00000306324 BTBD11A6QL63 1104 aa29.29■■■□□ 2.28
HOXD4-201ENST00000306324 PROM2Q8N271 834 aa29.29■■■□□ 2.28
HOXD4-201ENST00000306324 TAF7Q15545 349 aaPredicted RBP29.29■■■□□ 2.28
HOXD4-201ENST00000306324 UBR2Q8IWV8 1755 aa29.28■■■□□ 2.28
HOXD4-201ENST00000306324 RBM42Q9BTD8 480 aaKnown RBP29.28■■■□□ 2.28
HOXD4-201ENST00000306324 CCNL1Q9UK58 526 aaPredicted RBP29.28■■■□□ 2.28
HOXD4-201ENST00000306324 PTCD1O75127 700 aaKnown RBP29.27■■■□□ 2.28
HOXD4-201ENST00000306324 KCNQ4P56696 695 aa29.27■■■□□ 2.28
HOXD4-201ENST00000306324 TTC5Q8N0Z6 440 aa29.27■■■□□ 2.28
HOXD4-201ENST00000306324 TAF1LQ8IZX4 1826 aa29.27■■■□□ 2.28
HOXD4-201ENST00000306324 LOC102724428A0A0B4J2F2 783 aa29.25■■■□□ 2.27
HOXD4-201ENST00000306324 SIK1P57059 783 aa29.25■■■□□ 2.27
HOXD4-201ENST00000306324 SLC27A3Q5K4L6 730 aa29.25■■■□□ 2.27
HOXD4-201ENST00000306324 MIS18AQ9NYP9 233 aa29.25■■■□□ 2.27
HOXD4-201ENST00000306324 KDM3BQ7LBC6 1761 aa29.25■■■□□ 2.27
HOXD4-201ENST00000306324 ZNF790Q6PG37 636 aa29.24■■■□□ 2.27
HOXD4-201ENST00000306324 LRRC4BQ9NT99 713 aa29.24■■■□□ 2.27
HOXD4-201ENST00000306324 C5P01031 1676 aa29.23■■■□□ 2.27
HOXD4-201ENST00000306324 CCDC27Q2M243 656 aa29.23■■■□□ 2.27
HOXD4-201ENST00000306324 KCPQ6ZWJ8 1503 aa29.22■■■□□ 2.27
HOXD4-201ENST00000306324 KCNQ3O43525 872 aa29.22■■■□□ 2.27
HOXD4-201ENST00000306324 ATP6V1AP38606 617 aa29.22■■■□□ 2.27
HOXD4-201ENST00000306324 LAS1LQ9Y4W2 734 aaKnown RBP29.22■■■□□ 2.27
HOXD4-201ENST00000306324 ZNF831Q5JPB2 1677 aa29.21■■■□□ 2.27
HOXD4-201ENST00000306324 WWC1Q8IX03 1113 aa29.21■■■□□ 2.27
HOXD4-201ENST00000306324 NCBP3Q53F19 620 aaKnown RBP29.2■■■□□ 2.26
HOXD4-201ENST00000306324 CALD1Q05682 793 aaKnown RBP29.19■■■□□ 2.26
HOXD4-201ENST00000306324 SLC4A9Q96Q91 983 aa29.19■■■□□ 2.26
HOXD4-201ENST00000306324 TSPYL4Q9UJ04 414 aa29.19■■■□□ 2.26
HOXD4-201ENST00000306324 TJP1Q07157 1748 aa29.18■■■□□ 2.26
HOXD4-201ENST00000306324 NGEFQ8N5V2 710 aa29.17■■■□□ 2.26
HOXD4-201ENST00000306324 ZNF496Q96IT1 587 aaPredicted RBP29.17■■■□□ 2.26
HOXD4-201ENST00000306324 COL5A3P25940 1745 aaPredicted RBP29.17■■■□□ 2.26
HOXD4-201ENST00000306324 FMNL2Q96PY5 1086 aa29.17■■■□□ 2.26
HOXD4-201ENST00000306324 ITPK1Q13572 414 aa29.16■■■□□ 2.26
HOXD4-201ENST00000306324 NBPF14Q5TI25 921 aa29.15■■■□□ 2.26
HOXD4-201ENST00000306324 CICQ96RK0 1608 aaPredicted RBP29.14■■■□□ 2.26
HOXD4-201ENST00000306324 C4BP0C0L5 1744 aa29.14■■■□□ 2.26
HOXD4-201ENST00000306324 CFAP44Q96MT7 982 aa29.14■■■□□ 2.26
HOXD4-201ENST00000306324 BABAM1Q9NWV8 329 aa29.14■■■□□ 2.26
HOXD4-201ENST00000306324 HEG1Q9ULI3 1381 aa29.13■■■□□ 2.25
HOXD4-201ENST00000306324 CHL1O00533 1208 aa29.12■■■□□ 2.25
HOXD4-201ENST00000306324 GNAI1P63096 354 aa29.12■■■□□ 2.25
HOXD4-201ENST00000306324 LINC00116Q8NCU8 138 aa29.12■■■□□ 2.25
HOXD4-201ENST00000306324 ANO8Q9HCE9 1232 aaPredicted RBP29.12■■■□□ 2.25
HOXD4-201ENST00000306324 IFT57Q9NWB7 429 aa29.12■■■□□ 2.25
HOXD4-201ENST00000306324 VSIG10Q8N0Z9 540 aa29.11■■■□□ 2.25
HOXD4-201ENST00000306324 HMGB2P26583 209 aaKnown RBP29.1■■■□□ 2.25
HOXD4-201ENST00000306324 DNAJC10Q8IXB1 793 aa29.1■■■□□ 2.25
HOXD4-201ENST00000306324 STK32BQ9NY57 414 aa29.1■■■□□ 2.25
HOXD4-201ENST00000306324 MYH14Q7Z406 1995 aaKnown RBP29.1■■■□□ 2.25
HOXD4-201ENST00000306324 WDR63Q8IWG1 891 aa29.1■■■□□ 2.25
HOXD4-201ENST00000306324 TUBGCP6Q96RT7 1819 aa29.1■■■□□ 2.25
HOXD4-201ENST00000306324 ZNF853P0CG23 659 aa29.09■■■□□ 2.25
HOXD4-201ENST00000306324 EIF4A1P60842 406 aaKnown RBP29.09■■■□□ 2.25
HOXD4-201ENST00000306324 MBIPQ9NS73 344 aa29.09■■■□□ 2.25
HOXD4-201ENST00000306324 ZNF827Q17R98 1081 aa29.08■■■□□ 2.25
HOXD4-201ENST00000306324 IL16Q14005 1332 aa29.07■■■□□ 2.24
HOXD4-201ENST00000306324 HNRNPUQ00839 825 aaKnown RBP eCLIP29.07■■■□□ 2.24
HOXD4-201ENST00000306324 SLC15A2Q16348 729 aa29.07■■■□□ 2.24
HOXD4-201ENST00000306324 SNRPA1P09661 255 aaKnown RBP29.06■■■□□ 2.24
HOXD4-201ENST00000306324 AKT1S1Q96B36 256 aa29.06■■■□□ 2.24
HOXD4-201ENST00000306324 AK7Q96M32 723 aa29.06■■■□□ 2.24
HOXD4-201ENST00000306324 UBR3Q6ZT12 1888 aa29.06■■■□□ 2.24
HOXD4-201ENST00000306324 LAMB4A4D0S4 1761 aa29.06■■■□□ 2.24
HOXD4-201ENST00000306324 PRAMEF22A3QJZ6 481 aa29.05■■■□□ 2.24
HOXD4-201ENST00000306324 TEX13AQ9BXU3 409 aaPredicted RBP29.05■■■□□ 2.24
HOXD4-201ENST00000306324 ZNF521Q96K83 1311 aa29.05■■■□□ 2.24
HOXD4-201ENST00000306324 R3HDM1Q15032 1099 aaKnown RBP29.04■■■□□ 2.24
HOXD4-201ENST00000306324 TFCP2L1Q9NZI6 479 aa29.04■■■□□ 2.24
HOXD4-201ENST00000306324 TSR2Q969E8 191 aaKnown RBP29.04■■■□□ 2.24
HOXD4-201ENST00000306324 PSDA5PKW4 1024 aaPredicted RBP29.03■■■□□ 2.24
HOXD4-201ENST00000306324 STARD3NLO95772 234 aa29.03■■■□□ 2.24
HOXD4-201ENST00000306324 CYP19A1P11511 503 aaPredicted RBP29.03■■■□□ 2.24
HOXD4-201ENST00000306324 CRKLP46109 303 aaKnown RBP29.03■■■□□ 2.24
HOXD4-201ENST00000306324 QSER1Q2KHR3 1735 aa29.03■■■□□ 2.24
HOXD4-201ENST00000306324 CNTNAP4Q9C0A0 1308 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms