RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 SOGA3Q5TF21 947 aa18.82■□□□□ 0.6
USP42-201ENST00000306177 LRP2BPQ9P2M1 347 aa18.82■□□□□ 0.6
USP42-201ENST00000306177 SERPINC1P01008 464 aa18.82■□□□□ 0.6
USP42-201ENST00000306177 CCDC85AQ96PX6 553 aaPredicted RBP18.82■□□□□ 0.6
USP42-201ENST00000306177 PHF23Q9BUL5 403 aaPredicted RBP18.82■□□□□ 0.6
USP42-201ENST00000306177 TRAPPC8Q9Y2L5 1435 aa18.81■□□□□ 0.6
USP42-201ENST00000306177 IDH1O75874 414 aaKnown RBP18.81■□□□□ 0.6
USP42-201ENST00000306177 BRPF1P55201 1214 aaPredicted RBP18.81■□□□□ 0.6
USP42-201ENST00000306177 F6X3S4 739 aa18.81■□□□□ 0.6
USP42-201ENST00000306177 SMARCA5O60264 1052 aaPredicted RBP18.81■□□□□ 0.6
USP42-201ENST00000306177 TTLL5Q6EMB2 1281 aa18.81■□□□□ 0.6
USP42-201ENST00000306177 METTL24Q5JXM2 366 aa18.81■□□□□ 0.6
USP42-201ENST00000306177 NUP160Q12769 1436 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 AIDAQ96BJ3 306 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 MYD88Q99836 296 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 TCOF1Q13428 1488 aaKnown RBP18.8■□□□□ 0.6
USP42-201ENST00000306177 PRAG1Q86YV5 1406 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 TRIM27P14373 513 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 SPC24Q8NBT2 197 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 GRPEL1Q9HAV7 217 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 STIM1Q13586 685 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 WDR62O43379 1518 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 PTPRCP08575 1304 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 DNAAF4Q8WXU2 420 aa18.8■□□□□ 0.6
USP42-201ENST00000306177 WASF1Q92558 559 aa18.79■□□□□ 0.6
USP42-201ENST00000306177 HMGN5P82970 282 aaKnown RBP18.78■□□□□ 0.6
USP42-201ENST00000306177 KRT28Q7Z3Y7 464 aa18.78■□□□□ 0.6
USP42-201ENST00000306177 MTERF4Q7Z6M4 381 aaKnown RBP18.78■□□□□ 0.6
USP42-201ENST00000306177 DBF4Q9UBU7 674 aaPredicted RBP18.78■□□□□ 0.6
USP42-201ENST00000306177 ZNF652Q9Y2D9 606 aa18.78■□□□□ 0.6
USP42-201ENST00000306177 U3KPZ7 1027 aaPredicted RBP18.78■□□□□ 0.6
USP42-201ENST00000306177 BICDL1Q6ZP65 573 aa18.78■□□□□ 0.6
USP42-201ENST00000306177 HYPKQ9NX55 129 aa18.78■□□□□ 0.6
USP42-201ENST00000306177 ERCC4Q92889 916 aaPredicted RBP18.77■□□□□ 0.6
USP42-201ENST00000306177 NUP62CLQ9H1M0 184 aa18.77■□□□□ 0.6
USP42-201ENST00000306177 ZNHIT6Q9NWK9 470 aaKnown RBP18.77■□□□□ 0.6
USP42-201ENST00000306177 BRPF3Q9ULD4 1205 aa18.77■□□□□ 0.6
USP42-201ENST00000306177 SPINK5Q9NQ38 1064 aaPredicted RBP18.77■□□□□ 0.6
USP42-201ENST00000306177 UHRF1BP1LA0JNW5 1464 aa18.77■□□□□ 0.6
USP42-201ENST00000306177 TEX14Q8IWB6 1497 aa18.77■□□□□ 0.6
USP42-201ENST00000306177 SF3B2Q13435 895 aaKnown RBP18.77■□□□□ 0.6
USP42-201ENST00000306177 VSIG10Q8N0Z9 540 aa18.77■□□□□ 0.6
USP42-201ENST00000306177 BCL11BQ9C0K0 894 aaPredicted RBP18.77■□□□□ 0.59
USP42-201ENST00000306177 HMGB2P26583 209 aaKnown RBP18.76■□□□□ 0.59
USP42-201ENST00000306177 ZFYVE27Q5T4F4 411 aa18.76■□□□□ 0.59
USP42-201ENST00000306177 PRPF40BQ6NWY9 871 aaKnown RBP18.76■□□□□ 0.59
USP42-201ENST00000306177 FLIIQ13045 1269 aa18.76■□□□□ 0.59
USP42-201ENST00000306177 BOLA2Q9H3K6 86 aa18.76■□□□□ 0.59
USP42-201ENST00000306177 LRRFIP2Q9Y608 721 aaKnown RBP18.76■□□□□ 0.59
USP42-201ENST00000306177 RBM5P52756 815 aaKnown RBP eCLIP18.76■□□□□ 0.59
USP42-201ENST00000306177 PPFIBP1Q86W92 1011 aa18.76■□□□□ 0.59
USP42-201ENST00000306177 SKAP1Q86WV1 359 aa18.76■□□□□ 0.59
USP42-201ENST00000306177 HSP90AB2PQ58FF8 381 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 CEP57L1Q8IYX8 460 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 FAM83GA6ND36 823 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 CBFA2T2O43439 604 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 FBLN1P23142 703 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 MBIPQ9NS73 344 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 ABCF2Q9UG63 623 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 IFIT1P09914 478 aaKnown RBP18.75■□□□□ 0.59
USP42-201ENST00000306177 MAP7D2Q96T17 732 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 IL16Q14005 1332 aa18.75■□□□□ 0.59
USP42-201ENST00000306177 ASXL1Q8IXJ9 1541 aa18.74■□□□□ 0.59
USP42-201ENST00000306177 HSP90AB3PQ58FF7 597 aa18.74■□□□□ 0.59
USP42-201ENST00000306177 DDX11Q96FC9 970 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 UPF3BQ9BZI7 483 aaKnown RBP18.73■□□□□ 0.59
USP42-201ENST00000306177 MYO6Q9UM54 1294 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 CFAP43Q8NDM7 1665 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 TMEM132AQ24JP5 1023 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 ABCC10Q5T3U5 1492 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 IFIT5Q13325 482 aaKnown RBP18.73■□□□□ 0.59
USP42-201ENST00000306177 SYCP1Q15431 976 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 CCDC83Q8IWF9 413 aa18.73■□□□□ 0.59
USP42-201ENST00000306177 CNKSR2Q8WXI2 1034 aa18.72■□□□□ 0.59
USP42-201ENST00000306177 SH2B1Q9NRF2 756 aaPredicted RBP18.72■□□□□ 0.59
USP42-201ENST00000306177 CAVIN4Q5BKX8 364 aa18.72■□□□□ 0.59
USP42-201ENST00000306177 RIMS2Q9UQ26 1411 aa18.72■□□□□ 0.59
USP42-201ENST00000306177 PPP1R1BQ9UD71 204 aaPredicted RBP18.71■□□□□ 0.59
USP42-201ENST00000306177 ADAMTS2O95450 1211 aa18.71■□□□□ 0.59
USP42-201ENST00000306177 RDXP35241 583 aaKnown RBP18.71■□□□□ 0.59
USP42-201ENST00000306177 ZSCAN29Q8IWY8 852 aaPredicted RBP18.71■□□□□ 0.59
USP42-201ENST00000306177 LUC7LQ9NQ29 371 aaKnown RBP18.71■□□□□ 0.59
USP42-201ENST00000306177 ZHX3Q9H4I2 956 aa18.71■□□□□ 0.59
USP42-201ENST00000306177 TTC21AQ8NDW8 1320 aa18.71■□□□□ 0.59
USP42-201ENST00000306177 CCDC8Q9H0W5 538 aaPredicted RBP18.71■□□□□ 0.59
USP42-201ENST00000306177 SHANK2Q9UPX8 1470 aa18.71■□□□□ 0.58
USP42-201ENST00000306177 CADPS2Q86UW7 1296 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 CEP131Q9UPN4 1083 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 PLEKHH1Q9ULM0 1364 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 BMP2KQ9NSY1 1161 aaPredicted RBP18.7■□□□□ 0.58
USP42-201ENST00000306177 HMGB1P09429 215 aaKnown RBP18.7■□□□□ 0.58
USP42-201ENST00000306177 MAP3K11Q16584 847 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 IFNL2Q8IZJ0 200 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 ANKRD24Q8TF21 1146 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 ZNF287Q9HBT7 754 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 PPIP5K1Q6PFW1 1433 aa18.7■□□□□ 0.58
USP42-201ENST00000306177 ZPR1O75312 459 aa18.69■□□□□ 0.58
USP42-201ENST00000306177 A0A087WZG4 1122 aa18.69■□□□□ 0.58
USP42-201ENST00000306177 EIF4G3O43432 1585 aaKnown RBP18.69■□□□□ 0.58
USP42-201ENST00000306177 TANGO6Q9C0B7 1094 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms