RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 CYP27B1O15528 508 aa29.12■■■□□ 2.25
PTX3-201ENST00000295927 DDX19BQ9UMR2 479 aa29.11■■■□□ 2.25
PTX3-201ENST00000295927 EIF4A1P60842 406 aaKnown RBP29.1■■■□□ 2.25
PTX3-201ENST00000295927 API5Q9BZZ5 524 aaKnown RBP29.1■■■□□ 2.25
PTX3-201ENST00000295927 KCNQ3O43525 872 aa29.09■■■□□ 2.25
PTX3-201ENST00000295927 CENPQQ7L2Z9 268 aaPredicted RBP29.09■■■□□ 2.25
PTX3-201ENST00000295927 SLC4A2P04920 1241 aa29.08■■■□□ 2.25
PTX3-201ENST00000295927 IL2RBP14784 551 aa29.08■■■□□ 2.25
PTX3-201ENST00000295927 ABCC4O15439 1325 aa29.08■■■□□ 2.25
PTX3-201ENST00000295927 ZCRB1Q8TBF4 217 aaKnown RBP29.07■■■□□ 2.24
PTX3-201ENST00000295927 CACNA1FO60840 1977 aa29.07■■■□□ 2.24
PTX3-201ENST00000295927 CCDC30Q5VVM6 783 aa29.06■■■□□ 2.24
PTX3-201ENST00000295927 HSP90AB1P08238 724 aaKnown RBP29.06■■■□□ 2.24
PTX3-201ENST00000295927 DCAF5Q96JK2 942 aa29.06■■■□□ 2.24
PTX3-201ENST00000295927 PLCH1Q4KWH8 1693 aa29.05■■■□□ 2.24
PTX3-201ENST00000295927 SHANK3Q9BYB0 1731 aa29.05■■■□□ 2.24
PTX3-201ENST00000295927 SLC52A2Q9HAB3 445 aa29.05■■■□□ 2.24
PTX3-201ENST00000295927 PTPRCP08575 1304 aa29.04■■■□□ 2.24
PTX3-201ENST00000295927 STK31Q9BXU1 1019 aa29.04■■■□□ 2.24
PTX3-201ENST00000295927 PCDHB15Q9Y5E8 787 aa29.04■■■□□ 2.24
PTX3-201ENST00000295927 PCDH11XQ9BZA7 1347 aa29.04■■■□□ 2.24
PTX3-201ENST00000295927 PCDH11YQ9BZA8 1340 aa29.04■■■□□ 2.24
PTX3-201ENST00000295927 RGS12O14924 1447 aa29.03■■■□□ 2.24
PTX3-201ENST00000295927 ADAMTS2O95450 1211 aa29.03■■■□□ 2.24
PTX3-201ENST00000295927 NECTIN2Q92692 538 aa29.03■■■□□ 2.24
PTX3-201ENST00000295927 USP35Q9P2H5 1018 aa29.03■■■□□ 2.24
PTX3-201ENST00000295927 MRC1P22897 1456 aa29.03■■■□□ 2.24
PTX3-201ENST00000295927 IGHDP01880 384 aa29.02■■■□□ 2.24
PTX3-201ENST00000295927 HOXB7P09629 217 aa29.02■■■□□ 2.24
PTX3-201ENST00000295927 G2E3Q7L622 706 aa29.02■■■□□ 2.24
PTX3-201ENST00000295927 NFATC2IPQ8NCF5 419 aa29.01■■■□□ 2.23
PTX3-201ENST00000295927 HDGFL1Q5TGJ6 251 aa29■■■□□ 2.23
PTX3-201ENST00000295927 TSHZ2Q9NRE2 1034 aa29■■■□□ 2.23
PTX3-201ENST00000295927 ZBTB40Q9NUA8 1239 aa29■■■□□ 2.23
PTX3-201ENST00000295927 NUTM2BA6NNL0 878 aaPredicted RBP28.99■■■□□ 2.23
PTX3-201ENST00000295927 NUTM2EB1AL46 878 aaPredicted RBP28.99■■■□□ 2.23
PTX3-201ENST00000295927 NUTM2AQ8IVF1 878 aaPredicted RBP28.99■■■□□ 2.23
PTX3-201ENST00000295927 CERKQ8TCT0 537 aa28.98■■■□□ 2.23
PTX3-201ENST00000295927 HEG1Q9ULI3 1381 aa28.98■■■□□ 2.23
PTX3-201ENST00000295927 NRAPQ86VF7 1730 aa28.98■■■□□ 2.23
PTX3-201ENST00000295927 ZBTB7BO15156 539 aaPredicted RBP28.96■■■□□ 2.23
PTX3-201ENST00000295927 EIF2S2P20042 333 aaKnown RBP28.96■■■□□ 2.23
PTX3-201ENST00000295927 ZNF790Q6PG37 636 aa28.96■■■□□ 2.23
PTX3-201ENST00000295927 SLC39A6Q13433 755 aa28.95■■■□□ 2.23
PTX3-201ENST00000295927 NKX1-1Q15270 411 aaPredicted RBP28.95■■■□□ 2.23
PTX3-201ENST00000295927 INTS3Q68E01 1043 aaKnown RBP28.95■■■□□ 2.23
PTX3-201ENST00000295927 DDX54Q8TDD1 881 aaKnown RBP28.95■■■□□ 2.23
PTX3-201ENST00000295927 CHMP4AQ9BY43 222 aa28.95■■■□□ 2.23
PTX3-201ENST00000295927 CHMP4BQ9H444 224 aaKnown RBP28.95■■■□□ 2.23
PTX3-201ENST00000295927 GIGYF1O75420 1035 aaPredicted RBP28.94■■■□□ 2.22
PTX3-201ENST00000295927 CABP4P57796 275 aa28.94■■■□□ 2.22
PTX3-201ENST00000295927 FLIIQ13045 1269 aa28.94■■■□□ 2.22
PTX3-201ENST00000295927 DISP2A7MBM2 1401 aa28.94■■■□□ 2.22
PTX3-201ENST00000295927 WNK3Q9BYP7 1800 aa28.93■■■□□ 2.22
PTX3-201ENST00000295927 RWDD1Q9H446 243 aaPredicted RBP28.92■■■□□ 2.22
PTX3-201ENST00000295927 NWD2Q9ULI1 1742 aa28.92■■■□□ 2.22
PTX3-201ENST00000295927 SKAP1Q86WV1 359 aa28.9■■■□□ 2.22
PTX3-201ENST00000295927 JCADQ9P266 1359 aa28.9■■■□□ 2.22
PTX3-201ENST00000295927 CHPF2Q9P2E5 772 aa28.9■■■□□ 2.22
PTX3-201ENST00000295927 PRAMEF22A3QJZ6 481 aa28.89■■■□□ 2.22
PTX3-201ENST00000295927 ERVV-2B6SEH9 535 aa28.89■■■□□ 2.22
PTX3-201ENST00000295927 F6X3S4 739 aa28.89■■■□□ 2.22
PTX3-201ENST00000295927 FKBP5Q13451 457 aaPredicted RBP28.89■■■□□ 2.22
PTX3-201ENST00000295927 C5P01031 1676 aa28.89■■■□□ 2.22
PTX3-201ENST00000295927 PHAXQ9H814 394 aaKnown RBP28.88■■■□□ 2.21
PTX3-201ENST00000295927 SLIT2O94813 1529 aa28.87■■■□□ 2.21
PTX3-201ENST00000295927 TTC5Q8N0Z6 440 aa28.87■■■□□ 2.21
PTX3-201ENST00000295927 HDAC1Q13547 482 aaPredicted RBP28.86■■■□□ 2.21
PTX3-201ENST00000295927 TOGARAM1Q9Y4F4 1720 aa28.86■■■□□ 2.21
PTX3-201ENST00000295927 SLC4A10Q6U841 1118 aa28.86■■■□□ 2.21
PTX3-201ENST00000295927 ZNF496Q96IT1 587 aaPredicted RBP28.86■■■□□ 2.21
PTX3-201ENST00000295927 DBF4Q9UBU7 674 aaPredicted RBP28.85■■■□□ 2.21
PTX3-201ENST00000295927 SPATA31A1Q5TZJ5 1347 aa28.85■■■□□ 2.21
PTX3-201ENST00000295927 CCT4P50991 539 aaKnown RBP28.84■■■□□ 2.21
PTX3-201ENST00000295927 C1orf115Q9H7X2 142 aa28.84■■■□□ 2.21
PTX3-201ENST00000295927 N4BP2Q86UW6 1770 aaPredicted RBP28.84■■■□□ 2.21
PTX3-201ENST00000295927 ANXA1P04083 346 aa28.82■■■□□ 2.2
PTX3-201ENST00000295927 FMNL2Q96PY5 1086 aa28.82■■■□□ 2.2
PTX3-201ENST00000295927 THRAP3Q9Y2W1 955 aaKnown RBP28.82■■■□□ 2.2
PTX3-201ENST00000295927 PAPPAQ13219 1627 aa28.82■■■□□ 2.2
PTX3-201ENST00000295927 UBR2Q8IWV8 1755 aa28.81■■■□□ 2.2
PTX3-201ENST00000295927 EXOC5O00471 708 aa28.81■■■□□ 2.2
PTX3-201ENST00000295927 SNRPA1P09661 255 aaKnown RBP28.8■■■□□ 2.2
PTX3-201ENST00000295927 PXDNLA1KZ92 1463 aa28.8■■■□□ 2.2
PTX3-201ENST00000295927 GLI3P10071 1580 aa28.8■■■□□ 2.2
PTX3-201ENST00000295927 SPATA31A5Q5VU36 1347 aa28.8■■■□□ 2.2
PTX3-201ENST00000295927 SPATA31A7Q8IWB4 1347 aa28.8■■■□□ 2.2
PTX3-201ENST00000295927 CDCA7Q9BWT1 371 aaPredicted RBP28.79■■■□□ 2.2
PTX3-201ENST00000295927 PROSER3Q2NL68 480 aa28.79■■■□□ 2.2
PTX3-201ENST00000295927 MEIS3Q99687 375 aa28.78■■■□□ 2.2
PTX3-201ENST00000295927 TNS2Q63HR2 1409 aa28.78■■■□□ 2.2
PTX3-201ENST00000295927 ITGB4P16144 1822 aa28.77■■■□□ 2.2
PTX3-201ENST00000295927 C8orf37Q96NL8 207 aa28.77■■■□□ 2.2
PTX3-201ENST00000295927 DDX21Q9NR30 783 aaKnown RBP eCLIP28.77■■■□□ 2.2
PTX3-201ENST00000295927 HYPKQ9NX55 129 aa28.77■■■□□ 2.2
PTX3-201ENST00000295927 LAMB4A4D0S4 1761 aa28.76■■■□□ 2.2
PTX3-201ENST00000295927 SPATA31A6Q5VVP1 1343 aa28.76■■■□□ 2.2
PTX3-201ENST00000295927 PDIA6Q15084 440 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 UNC5CLQ8IV45 518 aa28.75■■■□□ 2.19
PTX3-201ENST00000295927 NGLY1Q96IV0 654 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms