RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HDGFL1Q5TGJ6 251 aa24.86■■□□□ 1.57
VPS53-201ENST00000291074 LMOD2Q6P5Q4 547 aa24.86■■□□□ 1.57
VPS53-201ENST00000291074 KCNH5Q8NCM2 988 aa24.86■■□□□ 1.57
VPS53-201ENST00000291074 CEMIPQ8WUJ3 1361 aa24.86■■□□□ 1.57
VPS53-201ENST00000291074 PHAXQ9H814 394 aaKnown RBP24.85■■□□□ 1.57
VPS53-201ENST00000291074 HSP90AB1P08238 724 aaKnown RBP24.84■■□□□ 1.57
VPS53-201ENST00000291074 BABAM1Q9NWV8 329 aa24.84■■□□□ 1.57
VPS53-201ENST00000291074 N4BP2Q86UW6 1770 aaPredicted RBP24.84■■□□□ 1.57
VPS53-201ENST00000291074 PNMA6EA0A0J9YXQ4 647 aa24.84■■□□□ 1.57
VPS53-201ENST00000291074 PHRF1Q9P1Y6 1649 aaKnown RBP24.84■■□□□ 1.57
VPS53-201ENST00000291074 MED1Q15648 1581 aaPredicted RBP24.83■■□□□ 1.57
VPS53-201ENST00000291074 KCNQ3O43525 872 aa24.83■■□□□ 1.57
VPS53-201ENST00000291074 GCP02774 474 aa24.83■■□□□ 1.57
VPS53-201ENST00000291074 EIF2S2P20042 333 aaKnown RBP24.83■■□□□ 1.57
VPS53-201ENST00000291074 KDM3BQ7LBC6 1761 aa24.82■■□□□ 1.56
VPS53-201ENST00000291074 GNAI3P08754 354 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 DDIT3P35638 169 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 ZNF530Q6P9A1 599 aaPredicted RBP24.81■■□□□ 1.56
VPS53-201ENST00000291074 FOXD4L1Q9NU39 408 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 LRRFIP2Q9Y608 721 aaKnown RBP24.81■■□□□ 1.56
VPS53-201ENST00000291074 SOS1Q07889 1333 aaPredicted RBP24.81■■□□□ 1.56
VPS53-201ENST00000291074 MCM4P33991 863 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 TSHZ3Q63HK5 1081 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 IL27Q8NEV9 243 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 LMO7Q8WWI1 1683 aa24.81■■□□□ 1.56
VPS53-201ENST00000291074 MPRIPQ6WCQ1 1025 aa24.8■■□□□ 1.56
VPS53-201ENST00000291074 EIF4A1P60842 406 aaKnown RBP24.8■■□□□ 1.56
VPS53-201ENST00000291074 PXDNQ92626 1479 aa24.8■■□□□ 1.56
VPS53-201ENST00000291074 ARHGEF25Q86VW2 580 aa24.79■■□□□ 1.56
VPS53-201ENST00000291074 PDE1AP54750 535 aa24.79■■□□□ 1.56
VPS53-201ENST00000291074 USP44Q9H0E7 712 aa24.79■■□□□ 1.56
VPS53-201ENST00000291074 BRPF3Q9ULD4 1205 aa24.79■■□□□ 1.56
VPS53-201ENST00000291074 SLIT3O75094 1523 aa24.78■■□□□ 1.56
VPS53-201ENST00000291074 PXDNLA1KZ92 1463 aa24.78■■□□□ 1.56
VPS53-201ENST00000291074 ATP8B2P98198 1209 aa24.78■■□□□ 1.56
VPS53-201ENST00000291074 USP26Q9BXU7 913 aa24.78■■□□□ 1.56
VPS53-201ENST00000291074 K7ELQ4 463 aaPredicted RBP24.77■■□□□ 1.56
VPS53-201ENST00000291074 CHPF2Q9P2E5 772 aa24.77■■□□□ 1.56
VPS53-201ENST00000291074 TRPM3Q9HCF6 1732 aaPredicted RBP24.77■■□□□ 1.56
VPS53-201ENST00000291074 ANXA1P04083 346 aa24.77■■□□□ 1.56
VPS53-201ENST00000291074 TEFQ10587 303 aa24.76■■□□□ 1.55
VPS53-201ENST00000291074 AKAP4Q5JQC9 854 aa24.76■■□□□ 1.55
VPS53-201ENST00000291074 PROSER2Q86WR7 435 aaPredicted RBP24.76■■□□□ 1.55
VPS53-201ENST00000291074 ANKRD24Q8TF21 1146 aa24.76■■□□□ 1.55
VPS53-201ENST00000291074 RGPD5Q99666 1765 aa24.75■■□□□ 1.55
VPS53-201ENST00000291074 PLEKHO1Q53GL0 409 aaPredicted RBP24.75■■□□□ 1.55
VPS53-201ENST00000291074 LRRCC1Q9C099 1032 aa24.75■■□□□ 1.55
VPS53-201ENST00000291074 AXIN2Q9Y2T1 843 aa24.75■■□□□ 1.55
VPS53-201ENST00000291074 UBTFL1P0CB47 393 aaPredicted RBP24.75■■□□□ 1.55
VPS53-201ENST00000291074 OSBPL3Q9H4L5 887 aa24.75■■□□□ 1.55
VPS53-201ENST00000291074 BTBD11A6QL63 1104 aa24.74■■□□□ 1.55
VPS53-201ENST00000291074 HSP90AA1P07900 732 aaKnown RBP24.74■■□□□ 1.55
VPS53-201ENST00000291074 TUBGCP6Q96RT7 1819 aa24.74■■□□□ 1.55
VPS53-201ENST00000291074 KRT28Q7Z3Y7 464 aa24.74■■□□□ 1.55
VPS53-201ENST00000291074 SALL3Q9BXA9 1300 aa24.74■■□□□ 1.55
VPS53-201ENST00000291074 IBTKQ9P2D0 1353 aaPredicted RBP24.73■■□□□ 1.55
VPS53-201ENST00000291074 CASC1Q6TDU7 716 aa24.73■■□□□ 1.55
VPS53-201ENST00000291074 RTN4Q9NQC3 1192 aaKnown RBP24.71■■□□□ 1.55
VPS53-201ENST00000291074 RNMTO43148 476 aaKnown RBP24.71■■□□□ 1.55
VPS53-201ENST00000291074 SRCIN1Q9C0H9 1055 aa24.71■■□□□ 1.55
VPS53-201ENST00000291074 NCAPD2Q15021 1401 aa24.71■■□□□ 1.55
VPS53-201ENST00000291074 C1orf141Q5JVX7 400 aa24.7■■□□□ 1.55
VPS53-201ENST00000291074 TNPO1Q92973 898 aaKnown RBP24.7■■□□□ 1.55
VPS53-201ENST00000291074 C1orf167Q5SNV9 1468 aa24.7■■□□□ 1.55
VPS53-201ENST00000291074 MX1P20591 662 aa24.7■■□□□ 1.54
VPS53-201ENST00000291074 RABEP1Q15276 862 aa24.7■■□□□ 1.54
VPS53-201ENST00000291074 PI4KAP2A4QPH2 592 aa24.69■■□□□ 1.54
VPS53-201ENST00000291074 PI4KAP1Q8N8J0 262 aa24.69■■□□□ 1.54
VPS53-201ENST00000291074 EIF5BO60841 1220 aaKnown RBP24.69■■□□□ 1.54
VPS53-201ENST00000291074 AMOTQ4VCS5 1084 aa24.69■■□□□ 1.54
VPS53-201ENST00000291074 GZF1Q9H116 711 aaPredicted RBP24.69■■□□□ 1.54
VPS53-201ENST00000291074 HOXB7P09629 217 aa24.69■■□□□ 1.54
VPS53-201ENST00000291074 ZC3H6P61129 1189 aaKnown RBP24.69■■□□□ 1.54
VPS53-201ENST00000291074 AK9Q5TCS8 1911 aa24.68■■□□□ 1.54
VPS53-201ENST00000291074 NBPF7P0C2Y1 421 aaPredicted RBP24.68■■□□□ 1.54
VPS53-201ENST00000291074 IL1RAPL2Q9NP60 686 aa24.68■■□□□ 1.54
VPS53-201ENST00000291074 CIZ1Q9ULV3 898 aaPredicted RBP24.68■■□□□ 1.54
VPS53-201ENST00000291074 ERC2O15083 957 aa24.68■■□□□ 1.54
VPS53-201ENST00000291074 PPP1R42Q7Z4L9 355 aa24.68■■□□□ 1.54
VPS53-201ENST00000291074 CAMTA1Q9Y6Y1 1673 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 DNAAF4Q8WXU2 420 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 DDX17Q92841 729 aaKnown RBP24.67■■□□□ 1.54
VPS53-201ENST00000291074 KIF1AQ12756 1690 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 PRAMEF22A3QJZ6 481 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 RAB3GAP1Q15042 981 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 SSH3Q8TE77 659 aa24.67■■□□□ 1.54
VPS53-201ENST00000291074 TRAK2O60296 914 aa24.66■■□□□ 1.54
VPS53-201ENST00000291074 BEND3Q5T5X7 828 aa24.66■■□□□ 1.54
VPS53-201ENST00000291074 ADCY9O60503 1353 aa24.66■■□□□ 1.54
VPS53-201ENST00000291074 REC8O95072 547 aa24.66■■□□□ 1.54
VPS53-201ENST00000291074 PROSER3Q2NL68 480 aa24.65■■□□□ 1.54
VPS53-201ENST00000291074 C19orf44Q9H6X5 657 aa24.65■■□□□ 1.54
VPS53-201ENST00000291074 ARXQ96QS3 562 aa24.64■■□□□ 1.54
VPS53-201ENST00000291074 ALS2Q96Q42 1657 aa24.64■■□□□ 1.53
VPS53-201ENST00000291074 RILPL2Q969X0 211 aa24.64■■□□□ 1.53
VPS53-201ENST00000291074 TRIM6-TRIM34B2RNG4 842 aa24.63■■□□□ 1.53
VPS53-201ENST00000291074 SURF6O75683 361 aaKnown RBP24.63■■□□□ 1.53
VPS53-201ENST00000291074 SIPA1L3O60292 1781 aaPredicted RBP24.63■■□□□ 1.53
VPS53-201ENST00000291074 NUTM1Q86Y26 1132 aa24.63■■□□□ 1.53
VPS53-201ENST00000291074 UNC5CLQ8IV45 518 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms