RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 NFATC2IPQ8NCF5 419 aa24.47■■□□□ 1.51
PDLIM3-202ENST00000284770 MRC1P22897 1456 aa24.46■■□□□ 1.51
PDLIM3-202ENST00000284770 CABP4P57796 275 aa24.46■■□□□ 1.51
PDLIM3-202ENST00000284770 THSD7AQ9UPZ6 1657 aa24.46■■□□□ 1.51
PDLIM3-202ENST00000284770 RNF123Q5XPI4 1314 aa24.45■■□□□ 1.51
PDLIM3-202ENST00000284770 A0A0G2JS52 829 aa24.45■■□□□ 1.5
PDLIM3-202ENST00000284770 MYT1Q01538 1121 aa24.45■■□□□ 1.5
PDLIM3-202ENST00000284770 MARCH10Q8NA82 808 aaPredicted RBP24.45■■□□□ 1.5
PDLIM3-202ENST00000284770 SIPA1L3O60292 1781 aaPredicted RBP24.44■■□□□ 1.5
PDLIM3-202ENST00000284770 C8orf58Q8NAV2 365 aa24.42■■□□□ 1.5
PDLIM3-202ENST00000284770 TSPYL6Q8N831 410 aa24.41■■□□□ 1.5
PDLIM3-202ENST00000284770 VAMP4O75379 141 aa24.4■■□□□ 1.5
PDLIM3-202ENST00000284770 SEPT12Q8IYM1 358 aa24.4■■□□□ 1.5
PDLIM3-202ENST00000284770 KDM3BQ7LBC6 1761 aa24.4■■□□□ 1.5
PDLIM3-202ENST00000284770 RBM6P78332 1123 aaKnown RBP24.39■■□□□ 1.5
PDLIM3-202ENST00000284770 KRT24Q2M2I5 525 aa24.39■■□□□ 1.5
PDLIM3-202ENST00000284770 TWISTNBQ3B726 338 aaPredicted RBP24.39■■□□□ 1.5
PDLIM3-202ENST00000284770 TOGARAM1Q9Y4F4 1720 aa24.39■■□□□ 1.5
PDLIM3-202ENST00000284770 ELL2O00472 640 aaPredicted RBP24.39■■□□□ 1.49
PDLIM3-202ENST00000284770 KCNQ3O43525 872 aa24.39■■□□□ 1.49
PDLIM3-202ENST00000284770 NEFLP07196 543 aa24.39■■□□□ 1.49
PDLIM3-202ENST00000284770 ZNF790Q6PG37 636 aa24.39■■□□□ 1.49
PDLIM3-202ENST00000284770 ZNF428Q96B54 188 aa24.39■■□□□ 1.49
PDLIM3-202ENST00000284770 RARSP54136 660 aaKnown RBP24.38■■□□□ 1.49
PDLIM3-202ENST00000284770 EIF4A1P60842 406 aaKnown RBP24.38■■□□□ 1.49
PDLIM3-202ENST00000284770 TMOD3Q9NYL9 352 aa24.37■■□□□ 1.49
PDLIM3-202ENST00000284770 FKBP8Q14318 412 aa24.37■■□□□ 1.49
PDLIM3-202ENST00000284770 RGS17Q9UGC6 210 aaPredicted RBP24.37■■□□□ 1.49
PDLIM3-202ENST00000284770 SLC39A6Q13433 755 aa24.36■■□□□ 1.49
PDLIM3-202ENST00000284770 SOS1Q07889 1333 aaPredicted RBP24.35■■□□□ 1.49
PDLIM3-202ENST00000284770 PIGBQ92521 554 aa24.34■■□□□ 1.49
PDLIM3-202ENST00000284770 TTC5Q8N0Z6 440 aa24.34■■□□□ 1.49
PDLIM3-202ENST00000284770 BCAR3O75815 825 aa24.33■■□□□ 1.49
PDLIM3-202ENST00000284770 RXRBP28702 533 aa24.33■■□□□ 1.49
PDLIM3-202ENST00000284770 PRIM1P49642 420 aaKnown RBP24.33■■□□□ 1.49
PDLIM3-202ENST00000284770 BCL9O00512 1426 aa24.33■■□□□ 1.48
PDLIM3-202ENST00000284770 HEG1Q9ULI3 1381 aa24.32■■□□□ 1.48
PDLIM3-202ENST00000284770 ALDH1L2Q3SY69 923 aa24.32■■□□□ 1.48
PDLIM3-202ENST00000284770 ILDR1Q86SU0 546 aaPredicted RBP24.32■■□□□ 1.48
PDLIM3-202ENST00000284770 SYTL4Q96C24 671 aaPredicted RBP24.32■■□□□ 1.48
PDLIM3-202ENST00000284770 RRP1P56182 461 aaKnown RBP24.31■■□□□ 1.48
PDLIM3-202ENST00000284770 SSH1Q8WYL5 1049 aa24.31■■□□□ 1.48
PDLIM3-202ENST00000284770 HOXB7P09629 217 aa24.31■■□□□ 1.48
PDLIM3-202ENST00000284770 DOT1LQ8TEK3 1739 aa24.31■■□□□ 1.48
PDLIM3-202ENST00000284770 ITGB4P16144 1822 aa24.3■■□□□ 1.48
PDLIM3-202ENST00000284770 ACSBG1Q96GR2 724 aa24.3■■□□□ 1.48
PDLIM3-202ENST00000284770 ZNF496Q96IT1 587 aaPredicted RBP24.3■■□□□ 1.48
PDLIM3-202ENST00000284770 GIGYF1O75420 1035 aaPredicted RBP24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 IRX6P78412 446 aaPredicted RBP24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 BCL2L13Q9BXK5 485 aa24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 POTEAQ6S8J7 498 aa24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 FMNL2Q96PY5 1086 aa24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 SMC4Q9NTJ3 1288 aa24.29■■□□□ 1.48
PDLIM3-202ENST00000284770 PAPPAQ13219 1627 aa24.28■■□□□ 1.48
PDLIM3-202ENST00000284770 KRT27Q7Z3Y8 459 aa24.27■■□□□ 1.48
PDLIM3-202ENST00000284770 ATG3Q9NT62 314 aa24.27■■□□□ 1.48
PDLIM3-202ENST00000284770 ASAP1Q9ULH1 1129 aa24.27■■□□□ 1.48
PDLIM3-202ENST00000284770 BRPF1P55201 1214 aaPredicted RBP24.26■■□□□ 1.47
PDLIM3-202ENST00000284770 FAM182BQ5T319 152 aa24.26■■□□□ 1.47
PDLIM3-202ENST00000284770 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.26■■□□□ 1.47
PDLIM3-202ENST00000284770 CHMP4AQ9BY43 222 aa24.26■■□□□ 1.47
PDLIM3-202ENST00000284770 KCNQ2O43526 872 aa24.25■■□□□ 1.47
PDLIM3-202ENST00000284770 SNRPA1P09661 255 aaKnown RBP24.25■■□□□ 1.47
PDLIM3-202ENST00000284770 CCDC30Q5VVM6 783 aa24.25■■□□□ 1.47
PDLIM3-202ENST00000284770 PLIN1O60240 522 aa24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 MRPL50Q8N5N7 158 aaKnown RBP24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 UBR2Q8IWV8 1755 aa24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 KCPQ6ZWJ8 1503 aa24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 TCERG1O14776 1098 aaKnown RBP24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 HDGFL1Q5TGJ6 251 aa24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 KAT6BQ8WYB5 2073 aa24.24■■□□□ 1.47
PDLIM3-202ENST00000284770 PTCD1O75127 700 aaKnown RBP24.23■■□□□ 1.47
PDLIM3-202ENST00000284770 PRAMEF22A3QJZ6 481 aa24.22■■□□□ 1.47
PDLIM3-202ENST00000284770 ERICH6BQ5W0A0 696 aa24.22■■□□□ 1.47
PDLIM3-202ENST00000284770 BRWD3Q6RI45 1802 aa24.22■■□□□ 1.47
PDLIM3-202ENST00000284770 EIF2S2P20042 333 aaKnown RBP24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 FAM196AQ6ZSG2 479 aa24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 FRAT1Q92837 279 aaPredicted RBP24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 KIF16BQ96L93 1317 aa24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 NECTIN2Q92692 538 aa24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 STK31Q9BXU1 1019 aa24.21■■□□□ 1.47
PDLIM3-202ENST00000284770 RGS12O14924 1447 aa24.2■■□□□ 1.46
PDLIM3-202ENST00000284770 SLC4A2P04920 1241 aa24.19■■□□□ 1.46
PDLIM3-202ENST00000284770 CANXP27824 592 aaKnown RBP24.19■■□□□ 1.46
PDLIM3-202ENST00000284770 VSIG10Q8N0Z9 540 aa24.19■■□□□ 1.46
PDLIM3-202ENST00000284770 NOB1Q9ULX3 412 aaKnown RBP24.19■■□□□ 1.46
PDLIM3-202ENST00000284770 IPO8O15397 1037 aaKnown RBP24.18■■□□□ 1.46
PDLIM3-202ENST00000284770 ZKSCAN2Q63HK3 967 aa24.18■■□□□ 1.46
PDLIM3-202ENST00000284770 NHSQ6T4R5 1651 aa24.18■■□□□ 1.46
PDLIM3-202ENST00000284770 SMARCC1Q92922 1105 aaPredicted RBP24.18■■□□□ 1.46
PDLIM3-202ENST00000284770 USP16Q9Y5T5 823 aa24.18■■□□□ 1.46
PDLIM3-202ENST00000284770 RBM42Q9BTD8 480 aaKnown RBP24.17■■□□□ 1.46
PDLIM3-202ENST00000284770 C5P01031 1676 aa24.17■■□□□ 1.46
PDLIM3-202ENST00000284770 PTF1AQ7RTS3 328 aa24.16■■□□□ 1.46
PDLIM3-202ENST00000284770 ARHGAP45Q92619 1136 aa24.16■■□□□ 1.46
PDLIM3-202ENST00000284770 DBF4Q9UBU7 674 aaPredicted RBP24.16■■□□□ 1.46
PDLIM3-202ENST00000284770 TEX13AQ9BXU3 409 aaPredicted RBP24.15■■□□□ 1.46
PDLIM3-202ENST00000284770 BCL11BQ9C0K0 894 aaPredicted RBP24.15■■□□□ 1.46
PDLIM3-202ENST00000284770 CHPF2Q9P2E5 772 aa24.15■■□□□ 1.46
PDLIM3-202ENST00000284770 PALLDQ8WX93 1383 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms