RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 BMP2KLQ5H9B9 411 aa11.02□□□□□ -0.65
PDGFC-201ENST00000274071 PTPRTO14522 1441 aa11.02□□□□□ -0.65
PDGFC-201ENST00000274071 TET3O43151 1660 aa11.02□□□□□ -0.65
PDGFC-201ENST00000274071 POLR3GO15318 223 aaPredicted RBP11.01□□□□□ -0.65
PDGFC-201ENST00000274071 PTGS1P23219 599 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 MNS1Q8NEH6 495 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 IFT57Q9NWB7 429 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 RAI14Q9P0K7 980 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.01□□□□□ -0.65
PDGFC-201ENST00000274071 EIF2AK4Q9P2K8 1649 aaKnown RBP11.01□□□□□ -0.65
PDGFC-201ENST00000274071 VWDEQ8N2E2 1590 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 CFAP74Q9C0B2 1584 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 TRPM2O94759 1503 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 GADD45BO75293 160 aaPredicted RBP11.01□□□□□ -0.65
PDGFC-201ENST00000274071 ZNF853P0CG23 659 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 LNPKQ9C0E8 428 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 CWC15Q9P013 229 aaKnown RBP11.01□□□□□ -0.65
PDGFC-201ENST00000274071 EXOC6BQ9Y2D4 811 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 GPRASP1Q5JY77 1395 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 SPHKAPQ2M3C7 1700 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 ZNF592Q92610 1267 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 POGZQ7Z3K3 1410 aa11.01□□□□□ -0.65
PDGFC-201ENST00000274071 PLEKHG2Q9H7P9 1386 aa11□□□□□ -0.65
PDGFC-201ENST00000274071 LRMPQ12912 555 aa11□□□□□ -0.65
PDGFC-201ENST00000274071 SWT1Q5T5J6 900 aaKnown RBP11□□□□□ -0.65
PDGFC-201ENST00000274071 PNMA6AP0CW24 399 aaPredicted RBP11□□□□□ -0.65
PDGFC-201ENST00000274071 NUCB1Q02818 461 aa11□□□□□ -0.65
PDGFC-201ENST00000274071 FBXO18Q8NFZ0 1043 aa11□□□□□ -0.65
PDGFC-201ENST00000274071 PRDM15P57071 1507 aaPredicted RBP11□□□□□ -0.65
PDGFC-201ENST00000274071 U2SURPO15042 1029 aaKnown RBP10.99□□□□□ -0.65
PDGFC-201ENST00000274071 NPHP1O15259 732 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 H2AFXP16104 143 aaPredicted RBP10.99□□□□□ -0.65
PDGFC-201ENST00000274071 MAGEA9P43362 315 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 CEP135Q66GS9 1140 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 MROH1Q8NDA8 1641 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 RAPGEF3O95398 923 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 ERO1AQ96HE7 468 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 PLCD4Q9BRC7 762 aa10.99□□□□□ -0.65
PDGFC-201ENST00000274071 NOM1Q5C9Z4 860 aaKnown RBP10.98□□□□□ -0.65
PDGFC-201ENST00000274071 PLPPR3Q6T4P5 718 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 CLTCL1P53675 1640 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 ERBB3P21860 1342 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 MLH3Q9UHC1 1453 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 SMARCA5O60264 1052 aaPredicted RBP10.98□□□□□ -0.65
PDGFC-201ENST00000274071 TPM4P67936 248 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 TPD52L1Q16890 204 aaPredicted RBP10.98□□□□□ -0.65
PDGFC-201ENST00000274071 GOLGA5Q8TBA6 731 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 GDPD2Q9HCC8 539 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 ZCCHC17Q9NP64 241 aaKnown RBP10.98□□□□□ -0.65
PDGFC-201ENST00000274071 CEP152O94986 1710 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 ATP6V1AP38606 617 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 GPS2Q13227 327 aa10.98□□□□□ -0.65
PDGFC-201ENST00000274071 SUGP1Q8IWZ8 645 aaKnown RBP10.98□□□□□ -0.65
PDGFC-201ENST00000274071 MAP2K2P36507 400 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 CLCN6P51797 869 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 GGT6Q6P531 493 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 CCDC186Q7Z3E2 898 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 USP26Q9BXU7 913 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.97□□□□□ -0.65
PDGFC-201ENST00000274071 CFAP65Q6ZU64 1925 aaKnown RBP10.97□□□□□ -0.65
PDGFC-201ENST00000274071 DISP3Q9P2K9 1392 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 HTATSF1O43719 755 aaKnown RBP10.97□□□□□ -0.65
PDGFC-201ENST00000274071 CHD1LQ86WJ1 897 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 NEO1Q92859 1461 aa10.97□□□□□ -0.65
PDGFC-201ENST00000274071 BRD1O95696 1058 aa10.96□□□□□ -0.65
PDGFC-201ENST00000274071 LRCH2Q5VUJ6 765 aa10.96□□□□□ -0.65
PDGFC-201ENST00000274071 MCTP2Q6DN12 878 aa10.96□□□□□ -0.65
PDGFC-201ENST00000274071 DZIP1LQ8IYY4 767 aaKnown RBP10.96□□□□□ -0.65
PDGFC-201ENST00000274071 LAMC1P11047 1609 aa10.96□□□□□ -0.65
PDGFC-201ENST00000274071 HECW2Q9P2P5 1572 aa10.96□□□□□ -0.65
PDGFC-201ENST00000274071 PPP1R12AO14974 1030 aaPredicted RBP10.96□□□□□ -0.66
PDGFC-201ENST00000274071 CCDC183Q5T5S1 534 aa10.96□□□□□ -0.66
PDGFC-201ENST00000274071 USP48Q86UV5 1035 aa10.96□□□□□ -0.66
PDGFC-201ENST00000274071 REXO1L1PQ8IX06 675 aa10.96□□□□□ -0.66
PDGFC-201ENST00000274071 TESK2Q96S53 571 aa10.96□□□□□ -0.66
PDGFC-201ENST00000274071 FOXD4L6Q3SYB3 417 aaPredicted RBP10.95□□□□□ -0.66
PDGFC-201ENST00000274071 FOXD4L3Q6VB84 417 aaPredicted RBP10.95□□□□□ -0.66
PDGFC-201ENST00000274071 ANKRD20A12PQ8NF67 263 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 MX1P20591 662 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 ERCC6LQ2NKX8 1250 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 CCDC9Q9Y3X0 531 aaKnown RBP10.95□□□□□ -0.66
PDGFC-201ENST00000274071 EFCAB6Q5THR3 1501 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 ZRANB2O95218 330 aaKnown RBP eCLIP10.95□□□□□ -0.66
PDGFC-201ENST00000274071 SLU7O95391 586 aaKnown RBP10.95□□□□□ -0.66
PDGFC-201ENST00000274071 IQUBQ8NA54 791 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 CEP89Q96ST8 783 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 FUCA2Q9BTY2 467 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 UBXN6Q9BZV1 441 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 NRBP1Q9UHY1 535 aa10.95□□□□□ -0.66
PDGFC-201ENST00000274071 ZKSCAN2Q63HK3 967 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 FRMPD1Q5SYB0 1578 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 MADDQ8WXG6 1647 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 EIF3CLB5ME19 914 aaKnown RBP10.94□□□□□ -0.66
PDGFC-201ENST00000274071 PPP2R5AQ15172 486 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 RNF20Q5VTR2 975 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 ZSCAN25Q6NSZ9 544 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 EIF3CQ99613 913 aaKnown RBP10.94□□□□□ -0.66
PDGFC-201ENST00000274071 KNSTRNQ9Y448 316 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 UGGT1Q9NYU2 1555 aa10.94□□□□□ -0.66
PDGFC-201ENST00000274071 RNF17Q9BXT8 1623 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms