RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 SLC27A3Q5K4L6 730 aa12.57□□□□□ -0.4
TPM3-201ENST00000271850 ARXQ96QS3 562 aa12.57□□□□□ -0.4
TPM3-201ENST00000271850 NSD3Q9BZ95 1437 aa12.56□□□□□ -0.4
TPM3-201ENST00000271850 TRIM26Q12899 539 aaPredicted RBP12.56□□□□□ -0.4
TPM3-201ENST00000271850 SYTL4Q96C24 671 aaPredicted RBP12.56□□□□□ -0.4
TPM3-201ENST00000271850 EMILIN1Q9Y6C2 1016 aa12.56□□□□□ -0.4
TPM3-201ENST00000271850 FLT4P35916 1363 aa12.56□□□□□ -0.4
TPM3-201ENST00000271850 PKD1L3Q7Z443 1732 aa12.55□□□□□ -0.4
TPM3-201ENST00000271850 CYP27B1O15528 508 aa12.55□□□□□ -0.4
TPM3-201ENST00000271850 AMIGO3Q86WK7 504 aa12.55□□□□□ -0.4
TPM3-201ENST00000271850 ZNF784Q8NCA9 323 aaPredicted RBP12.55□□□□□ -0.4
TPM3-201ENST00000271850 KIF12Q96FN5 646 aa12.55□□□□□ -0.4
TPM3-201ENST00000271850 C5P01031 1676 aa12.54□□□□□ -0.4
TPM3-201ENST00000271850 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
TPM3-201ENST00000271850 NLGN2Q8NFZ4 835 aa12.53□□□□□ -0.4
TPM3-201ENST00000271850 FAM163AQ96GL9 167 aaPredicted RBP12.53□□□□□ -0.4
TPM3-201ENST00000271850 CCNL1Q9UK58 526 aaPredicted RBP12.53□□□□□ -0.4
TPM3-201ENST00000271850 KIF24Q5T7B8 1368 aa12.53□□□□□ -0.4
TPM3-201ENST00000271850 TAF1LQ8IZX4 1826 aa12.53□□□□□ -0.4
TPM3-201ENST00000271850 COL23A1Q86Y22 540 aaPredicted RBP12.52□□□□□ -0.41
TPM3-201ENST00000271850 SLC16A10Q8TF71 515 aa12.52□□□□□ -0.41
TPM3-201ENST00000271850 TFCP2L1Q9NZI6 479 aa12.52□□□□□ -0.41
TPM3-201ENST00000271850 ITGB4P16144 1822 aa12.52□□□□□ -0.41
TPM3-201ENST00000271850 CGNL1Q0VF96 1302 aa12.52□□□□□ -0.41
TPM3-201ENST00000271850 SMG6Q86US8 1419 aaKnown RBP12.52□□□□□ -0.41
TPM3-201ENST00000271850 MAP2P11137 1827 aaKnown RBP12.51□□□□□ -0.41
TPM3-201ENST00000271850 CHD4Q14839 1912 aa12.51□□□□□ -0.41
TPM3-201ENST00000271850 TATP17735 454 aaPredicted RBP12.5□□□□□ -0.41
TPM3-201ENST00000271850 SMIM5Q71RC9 77 aa12.5□□□□□ -0.41
TPM3-201ENST00000271850 RAPGEF4Q8WZA2 1011 aa12.5□□□□□ -0.41
TPM3-201ENST00000271850 BMP2KQ9NSY1 1161 aaPredicted RBP12.5□□□□□ -0.41
TPM3-201ENST00000271850 PCDH11XQ9BZA7 1347 aa12.5□□□□□ -0.41
TPM3-201ENST00000271850 PCDH11YQ9BZA8 1340 aa12.5□□□□□ -0.41
TPM3-201ENST00000271850 PALLDQ8WX93 1383 aa12.5□□□□□ -0.41
TPM3-201ENST00000271850 C4BP0C0L5 1744 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 WASHC2AQ641Q2 1341 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 YBX3P16989 372 aaKnown RBP eCLIP12.48□□□□□ -0.41
TPM3-201ENST00000271850 TIE1P35590 1138 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 NKX1-1Q15270 411 aaPredicted RBP12.48□□□□□ -0.41
TPM3-201ENST00000271850 MSL1Q68DK7 614 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 PIGBQ92521 554 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 EYA1Q99502 592 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 POLKQ9UBT6 870 aa12.48□□□□□ -0.41
TPM3-201ENST00000271850 UBR3Q6ZT12 1888 aa12.47□□□□□ -0.41
TPM3-201ENST00000271850 CDCA8Q53HL2 280 aa12.47□□□□□ -0.41
TPM3-201ENST00000271850 MPRIPQ6WCQ1 1025 aa12.47□□□□□ -0.41
TPM3-201ENST00000271850 MIER1Q8N108 512 aa12.47□□□□□ -0.41
TPM3-201ENST00000271850 POLD1P28340 1107 aa12.46□□□□□ -0.41
TPM3-201ENST00000271850 KLHL34Q8N239 644 aa12.46□□□□□ -0.41
TPM3-201ENST00000271850 MAP3K13O43283 966 aa12.45□□□□□ -0.42
TPM3-201ENST00000271850 LINC00116Q8NCU8 138 aa12.45□□□□□ -0.42
TPM3-201ENST00000271850 PPM1GO15355 546 aaPredicted RBP12.44□□□□□ -0.42
TPM3-201ENST00000271850 SEC24BO95487 1268 aa12.44□□□□□ -0.42
TPM3-201ENST00000271850 EIF4A2Q14240 407 aaKnown RBP12.44□□□□□ -0.42
TPM3-201ENST00000271850 GPR162Q16538 588 aa12.44□□□□□ -0.42
TPM3-201ENST00000271850 TIMELESSQ9UNS1 1208 aa12.44□□□□□ -0.42
TPM3-201ENST00000271850 PHKG2P15735 406 aa12.43□□□□□ -0.42
TPM3-201ENST00000271850 ITPK1Q13572 414 aa12.43□□□□□ -0.42
TPM3-201ENST00000271850 ASAP1Q9ULH1 1129 aa12.43□□□□□ -0.42
TPM3-201ENST00000271850 KDRP35968 1356 aa12.43□□□□□ -0.42
TPM3-201ENST00000271850 LCE2DQ5TA82 110 aaPredicted RBP12.42□□□□□ -0.42
TPM3-201ENST00000271850 SLC4A9Q96Q91 983 aa12.42□□□□□ -0.42
TPM3-201ENST00000271850 IGSF1Q8N6C5 1336 aa12.41□□□□□ -0.42
TPM3-201ENST00000271850 CLSPNQ9HAW4 1339 aa12.41□□□□□ -0.42
TPM3-201ENST00000271850 LOC102724428A0A0B4J2F2 783 aa12.41□□□□□ -0.42
TPM3-201ENST00000271850 KDM6AO15550 1401 aaPredicted RBP12.41□□□□□ -0.42
TPM3-201ENST00000271850 HSPA5P11021 654 aaKnown RBP12.41□□□□□ -0.42
TPM3-201ENST00000271850 TNNT2P45379 298 aaPredicted RBP12.41□□□□□ -0.42
TPM3-201ENST00000271850 SIK1P57059 783 aa12.41□□□□□ -0.42
TPM3-201ENST00000271850 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.41□□□□□ -0.425e-7■■■□□ 17.7
TPM3-201ENST00000271850 TRPC6Q9Y210 931 aa12.41□□□□□ -0.42
TPM3-201ENST00000271850 CEP350Q5VT06 3117 aa12.4□□□□□ -0.42
TPM3-201ENST00000271850 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.4□□□□□ -0.42
TPM3-201ENST00000271850 POTEFA5A3E0 1075 aa12.4□□□□□ -0.42
TPM3-201ENST00000271850 PHF14O94880 888 aa12.4□□□□□ -0.42
TPM3-201ENST00000271850 PCGF6Q9BYE7 350 aa12.4□□□□□ -0.42
TPM3-201ENST00000271850 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
TPM3-201ENST00000271850 KIAA1551Q9HCM1 1747 aa12.4□□□□□ -0.43
TPM3-201ENST00000271850 C1QTNF8P60827 252 aa12.39□□□□□ -0.43
TPM3-201ENST00000271850 RASEFQ8IZ41 740 aa12.39□□□□□ -0.43
TPM3-201ENST00000271850 SMARCC1Q92922 1105 aaPredicted RBP12.39□□□□□ -0.43
TPM3-201ENST00000271850 POLR3GLQ9BT43 218 aa12.39□□□□□ -0.43
TPM3-201ENST00000271850 PANK3Q9H999 370 aa12.39□□□□□ -0.43
TPM3-201ENST00000271850 SPG7Q9UQ90 795 aa12.39□□□□□ -0.43
TPM3-201ENST00000271850 COL5A3P25940 1745 aaPredicted RBP12.38□□□□□ -0.43
TPM3-201ENST00000271850 AEBP1Q8IUX7 1158 aa12.38□□□□□ -0.43
TPM3-201ENST00000271850 IFNL2Q8IZJ0 200 aa12.38□□□□□ -0.43
TPM3-201ENST00000271850 AK7Q96M32 723 aa12.38□□□□□ -0.43
TPM3-201ENST00000271850 CD2APQ9Y5K6 639 aa12.38□□□□□ -0.43
TPM3-201ENST00000271850 ADCY9O60503 1353 aa12.38□□□□□ -0.43
TPM3-201ENST00000271850 TTLL13PA6NNM8 815 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 SSFA2P28290 1259 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 FLAD1Q8NFF5 587 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 TMOD3Q9NYL9 352 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 PLEKHG2Q9H7P9 1386 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 ZNF831Q5JPB2 1677 aa12.37□□□□□ -0.43
TPM3-201ENST00000271850 WWC3Q9ULE0 1092 aa12.36□□□□□ -0.43
TPM3-201ENST00000271850 ATP10DQ9P241 1426 aa12.36□□□□□ -0.43
TPM3-201ENST00000271850 MYH14Q7Z406 1995 aaKnown RBP12.36□□□□□ -0.43
TPM3-201ENST00000271850 KIF13BQ9NQT8 1826 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms