RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 PHKG2P15735 406 aa23.11■■□□□ 1.29
VIM-201ENST00000224237 NUTM2AQ8IVF1 878 aaPredicted RBP23.11■■□□□ 1.29
VIM-201ENST00000224237 ITPRIPQ8IWB1 547 aa23.11■■□□□ 1.29
VIM-201ENST00000224237 IFNL2Q8IZJ0 200 aa23.11■■□□□ 1.29
VIM-201ENST00000224237 SCN11AQ9UI33 1791 aa23.1■■□□□ 1.29
VIM-201ENST00000224237 TMEM57Q8N5G2 664 aa23.1■■□□□ 1.29
VIM-201ENST00000224237 API5Q9BZZ5 524 aaKnown RBP23.1■■□□□ 1.29
VIM-201ENST00000224237 BTBD11A6QL63 1104 aa23.09■■□□□ 1.29
VIM-201ENST00000224237 USP35Q9P2H5 1018 aa23.09■■□□□ 1.29
VIM-201ENST00000224237 CYP27B1O15528 508 aa23.09■■□□□ 1.29
VIM-201ENST00000224237 ABCC4O15439 1325 aa23.08■■□□□ 1.29
VIM-201ENST00000224237 KDM6AO15550 1401 aaPredicted RBP23.08■■□□□ 1.28
VIM-201ENST00000224237 PLCH1Q4KWH8 1693 aa23.08■■□□□ 1.28
VIM-201ENST00000224237 PTPRCP08575 1304 aa23.07■■□□□ 1.28
VIM-201ENST00000224237 HSP90AB1P08238 724 aaKnown RBP23.07■■□□□ 1.28
VIM-201ENST00000224237 HOXB7P09629 217 aa23.06■■□□□ 1.28
VIM-201ENST00000224237 EIF4A1P60842 406 aaKnown RBP23.06■■□□□ 1.28
VIM-201ENST00000224237 CCDC30Q5VVM6 783 aa23.06■■□□□ 1.28
VIM-201ENST00000224237 IL2RBP14784 551 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 DCAF5Q96JK2 942 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 STK31Q9BXU1 1019 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 PCDH11XQ9BZA7 1347 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 PCDH11YQ9BZA8 1340 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 KCNQ3O43525 872 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 SLC4A2P04920 1241 aa23.05■■□□□ 1.28
VIM-201ENST00000224237 CHMP4BQ9H444 224 aaKnown RBP23.05■■□□□ 1.28
VIM-201ENST00000224237 CACNA1FO60840 1977 aa23.04■■□□□ 1.28
VIM-201ENST00000224237 MRC1P22897 1456 aa23.04■■□□□ 1.28
VIM-201ENST00000224237 CHMP4AQ9BY43 222 aa23.04■■□□□ 1.28
VIM-201ENST00000224237 ZCRB1Q8TBF4 217 aaKnown RBP23.02■■□□□ 1.28
VIM-201ENST00000224237 SLC52A2Q9HAB3 445 aa23.02■■□□□ 1.28
VIM-201ENST00000224237 SHANK3Q9BYB0 1731 aa23.02■■□□□ 1.28
VIM-201ENST00000224237 RGS12O14924 1447 aa23.02■■□□□ 1.28
VIM-201ENST00000224237 PCDHB15Q9Y5E8 787 aa23.01■■□□□ 1.27
VIM-201ENST00000224237 NRAPQ86VF7 1730 aa23.01■■□□□ 1.27
VIM-201ENST00000224237 ZBTB40Q9NUA8 1239 aa23■■□□□ 1.27
VIM-201ENST00000224237 HDGFL1Q5TGJ6 251 aa23■■□□□ 1.27
VIM-201ENST00000224237 JCADQ9P266 1359 aa23■■□□□ 1.27
VIM-201ENST00000224237 IGHDP01880 384 aa22.99■■□□□ 1.27
VIM-201ENST00000224237 NECTIN2Q92692 538 aa22.98■■□□□ 1.27
VIM-201ENST00000224237 HEG1Q9ULI3 1381 aa22.98■■□□□ 1.27
VIM-201ENST00000224237 INTS3Q68E01 1043 aaKnown RBP22.97■■□□□ 1.27
VIM-201ENST00000224237 ZBTB7BO15156 539 aaPredicted RBP22.96■■□□□ 1.27
VIM-201ENST00000224237 NFATC2IPQ8NCF5 419 aa22.96■■□□□ 1.27
VIM-201ENST00000224237 DDX54Q8TDD1 881 aaKnown RBP22.96■■□□□ 1.27
VIM-201ENST00000224237 RWDD1Q9H446 243 aaPredicted RBP22.96■■□□□ 1.27
VIM-201ENST00000224237 DISP2A7MBM2 1401 aa22.96■■□□□ 1.27
VIM-201ENST00000224237 ZNF790Q6PG37 636 aa22.96■■□□□ 1.27
VIM-201ENST00000224237 FLIIQ13045 1269 aa22.95■■□□□ 1.26
VIM-201ENST00000224237 G2E3Q7L622 706 aa22.95■■□□□ 1.26
VIM-201ENST00000224237 SLIT2O94813 1529 aa22.95■■□□□ 1.26
VIM-201ENST00000224237 SLC39A6Q13433 755 aa22.94■■□□□ 1.26
VIM-201ENST00000224237 NKX1-1Q15270 411 aaPredicted RBP22.94■■□□□ 1.26
VIM-201ENST00000224237 GIGYF1O75420 1035 aaPredicted RBP22.94■■□□□ 1.26
VIM-201ENST00000224237 WNK3Q9BYP7 1800 aa22.93■■□□□ 1.26
VIM-201ENST00000224237 EIF2S2P20042 333 aaKnown RBP22.93■■□□□ 1.26
VIM-201ENST00000224237 HSPA1LP34931 641 aa22.93■■□□□ 1.26
VIM-201ENST00000224237 CABP4P57796 275 aa22.93■■□□□ 1.26
VIM-201ENST00000224237 NWD2Q9ULI1 1742 aa22.93■■□□□ 1.26
VIM-201ENST00000224237 LRP6O75581 1613 aa22.93■■□□□ 1.26
VIM-201ENST00000224237 HDAC1Q13547 482 aaPredicted RBP22.92■■□□□ 1.26
VIM-201ENST00000224237 FKBP5Q13451 457 aaPredicted RBP22.92■■□□□ 1.26
VIM-201ENST00000224237 C8orf37Q96NL8 207 aa22.92■■□□□ 1.26
VIM-201ENST00000224237 ERVV-2B6SEH9 535 aa22.91■■□□□ 1.26
VIM-201ENST00000224237 PRAMEF22A3QJZ6 481 aa22.9■■□□□ 1.26
VIM-201ENST00000224237 CCT4P50991 539 aaKnown RBP22.9■■□□□ 1.26
VIM-201ENST00000224237 TTC5Q8N0Z6 440 aa22.9■■□□□ 1.26
VIM-201ENST00000224237 SPATA31A1Q5TZJ5 1347 aa22.9■■□□□ 1.26
VIM-201ENST00000224237 CHPF2Q9P2E5 772 aa22.9■■□□□ 1.26
VIM-201ENST00000224237 PXDNLA1KZ92 1463 aa22.89■■□□□ 1.26
VIM-201ENST00000224237 TOGARAM1Q9Y4F4 1720 aa22.89■■□□□ 1.26
VIM-201ENST00000224237 DBF4Q9UBU7 674 aaPredicted RBP22.89■■□□□ 1.25
VIM-201ENST00000224237 N4BP2Q86UW6 1770 aaPredicted RBP22.88■■□□□ 1.25
VIM-201ENST00000224237 SPATA31A5Q5VU36 1347 aa22.87■■□□□ 1.25
VIM-201ENST00000224237 SPATA31A7Q8IWB4 1347 aa22.87■■□□□ 1.25
VIM-201ENST00000224237 F6X3S4 739 aa22.87■■□□□ 1.25
VIM-201ENST00000224237 NGLY1Q96IV0 654 aa22.87■■□□□ 1.25
VIM-201ENST00000224237 CCDC9Q9Y3X0 531 aaKnown RBP22.87■■□□□ 1.25
VIM-201ENST00000224237 C5P01031 1676 aa22.87■■□□□ 1.25
VIM-201ENST00000224237 SPATA31A6Q5VVP1 1343 aa22.86■■□□□ 1.25
VIM-201ENST00000224237 SLC4A10Q6U841 1118 aa22.86■■□□□ 1.25
VIM-201ENST00000224237 THRAP3Q9Y2W1 955 aaKnown RBP22.86■■□□□ 1.25
VIM-201ENST00000224237 ZNF496Q96IT1 587 aaPredicted RBP22.85■■□□□ 1.25
VIM-201ENST00000224237 FMNL2Q96PY5 1086 aa22.85■■□□□ 1.25
VIM-201ENST00000224237 CDCA7Q9BWT1 371 aaPredicted RBP22.85■■□□□ 1.25
VIM-201ENST00000224237 PHAXQ9H814 394 aaKnown RBP22.85■■□□□ 1.25
VIM-201ENST00000224237 PAPPAQ13219 1627 aa22.85■■□□□ 1.25
VIM-201ENST00000224237 BCL9LQ86UU0 1499 aa22.85■■□□□ 1.25
VIM-201ENST00000224237 SKAP1Q86WV1 359 aa22.84■■□□□ 1.25
VIM-201ENST00000224237 UNC5CLQ8IV45 518 aa22.84■■□□□ 1.25
VIM-201ENST00000224237 TNS2Q63HR2 1409 aa22.84■■□□□ 1.25
VIM-201ENST00000224237 UBR2Q8IWV8 1755 aa22.84■■□□□ 1.25
VIM-201ENST00000224237 ANXA1P04083 346 aa22.83■■□□□ 1.25
VIM-201ENST00000224237 SNRPA1P09661 255 aaKnown RBP22.83■■□□□ 1.25
VIM-201ENST00000224237 C1orf115Q9H7X2 142 aa22.83■■□□□ 1.25
VIM-201ENST00000224237 GLI3P10071 1580 aa22.82■■□□□ 1.24
VIM-201ENST00000224237 EXOC5O00471 708 aa22.82■■□□□ 1.24
VIM-201ENST00000224237 HYPKQ9NX55 129 aa22.82■■□□□ 1.24
VIM-201ENST00000224237 RBM19Q9Y4C8 960 aaKnown RBP22.82■■□□□ 1.24
VIM-201ENST00000224237 LAMB4A4D0S4 1761 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms