Protein–RNA interactions for Protein: Q8VHR0

Pcdh18, Protocadherin 18, mousemouse

Predictions only

Length 1,134 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh18Q8VHR0 Gm25239-201ENSMUST00000174915 86 ntBASIC33.15■■■□□ 2.9
Pcdh18Q8VHR0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Pcdh18Q8VHR0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Pcdh18Q8VHR0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Pcdh18Q8VHR0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Pcdh18Q8VHR0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
Pcdh18Q8VHR0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Pcdh18Q8VHR0 Psd-208ENSMUST00000224556 2034 ntBASIC30.37■■■□□ 2.45
Pcdh18Q8VHR0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Pcdh18Q8VHR0 Gm15042-201ENSMUST00000120212 883 ntBASIC29.56■■■□□ 2.32
Pcdh18Q8VHR0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Pcdh18Q8VHR0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Pcdh18Q8VHR0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Pcdh18Q8VHR0 Gm15045-201ENSMUST00000117359 883 ntBASIC28.97■■■□□ 2.23
Pcdh18Q8VHR0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Pcdh18Q8VHR0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
Pcdh18Q8VHR0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Pcdh18Q8VHR0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Pcdh18Q8VHR0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Pcdh18Q8VHR0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Pcdh18Q8VHR0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Pcdh18Q8VHR0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.66■■■□□ 2.18
Pcdh18Q8VHR0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Pcdh18Q8VHR0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Pcdh18Q8VHR0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Pcdh18Q8VHR0 Gm24109-201ENSMUST00000175489 103 ntBASIC28.43■■■□□ 2.14
Pcdh18Q8VHR0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Pcdh18Q8VHR0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Pcdh18Q8VHR0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Pcdh18Q8VHR0 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.19■■■□□ 2.1
Pcdh18Q8VHR0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdh18Q8VHR0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pcdh18Q8VHR0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Pcdh18Q8VHR0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdh18Q8VHR0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Pcdh18Q8VHR0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Pcdh18Q8VHR0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
Pcdh18Q8VHR0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.85■■■□□ 2.05
Pcdh18Q8VHR0 Gm23366-201ENSMUST00000175022 89 ntBASIC27.8■■■□□ 2.04
Pcdh18Q8VHR0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Pcdh18Q8VHR0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Pcdh18Q8VHR0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Pcdh18Q8VHR0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Pcdh18Q8VHR0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Pcdh18Q8VHR0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.63■■■□□ 2.01
Pcdh18Q8VHR0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.62■■■□□ 2.01
Pcdh18Q8VHR0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Pcdh18Q8VHR0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Pcdh18Q8VHR0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.53■■■□□ 2
Pcdh18Q8VHR0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdh18Q8VHR0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdh18Q8VHR0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Pcdh18Q8VHR0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Pcdh18Q8VHR0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
Pcdh18Q8VHR0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
Pcdh18Q8VHR0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.18■■□□□ 1.94
Pcdh18Q8VHR0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.17■■□□□ 1.94
Pcdh18Q8VHR0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.15■■□□□ 1.94
Pcdh18Q8VHR0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
Pcdh18Q8VHR0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Pcdh18Q8VHR0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Pcdh18Q8VHR0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
Pcdh18Q8VHR0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Pcdh18Q8VHR0 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.98■■□□□ 1.91
Pcdh18Q8VHR0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Pcdh18Q8VHR0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Pcdh18Q8VHR0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
Pcdh18Q8VHR0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Pcdh18Q8VHR0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Pcdh18Q8VHR0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Pcdh18Q8VHR0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Pcdh18Q8VHR0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Pcdh18Q8VHR0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdh18Q8VHR0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.77■■□□□ 1.88
Pcdh18Q8VHR0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.7■■□□□ 1.87
Pcdh18Q8VHR0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Pcdh18Q8VHR0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Pcdh18Q8VHR0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pcdh18Q8VHR0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Pcdh18Q8VHR0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Pcdh18Q8VHR0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.49■■□□□ 1.83
Pcdh18Q8VHR0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Pcdh18Q8VHR0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Pcdh18Q8VHR0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Pcdh18Q8VHR0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.38■■□□□ 1.81
Pcdh18Q8VHR0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdh18Q8VHR0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdh18Q8VHR0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
Pcdh18Q8VHR0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Pcdh18Q8VHR0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.27■■□□□ 1.8
Pcdh18Q8VHR0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pcdh18Q8VHR0 Zxda-201ENSMUST00000117281 2621 ntBASIC26.23■■□□□ 1.79
Pcdh18Q8VHR0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdh18Q8VHR0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Pcdh18Q8VHR0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pcdh18Q8VHR0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdh18Q8VHR0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Pcdh18Q8VHR0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
Pcdh18Q8VHR0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pcdh18Q8VHR0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 157 ms