Protein–RNA interactions for Protein: Q8VHQ4

Rab40c, Ras-related protein Rab-40C, mousemouse

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab40cQ8VHQ4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Rab40cQ8VHQ4 Gm25239-201ENSMUST00000174915 86 ntBASIC27.37■■□□□ 1.97
Rab40cQ8VHQ4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
Rab40cQ8VHQ4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Rab40cQ8VHQ4 Psd-208ENSMUST00000224556 2034 ntBASIC26.48■■□□□ 1.83
Rab40cQ8VHQ4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Rab40cQ8VHQ4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Rab40cQ8VHQ4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Rab40cQ8VHQ4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Rab40cQ8VHQ4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Rab40cQ8VHQ4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Rab40cQ8VHQ4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Rab40cQ8VHQ4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Rab40cQ8VHQ4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Rab40cQ8VHQ4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.92■■□□□ 1.58
Rab40cQ8VHQ4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Rab40cQ8VHQ4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Rab40cQ8VHQ4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Rab40cQ8VHQ4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Rab40cQ8VHQ4 Gm15042-201ENSMUST00000120212 883 ntBASIC24.76■■□□□ 1.55
Rab40cQ8VHQ4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Rab40cQ8VHQ4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Rab40cQ8VHQ4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Rab40cQ8VHQ4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Rab40cQ8VHQ4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Rab40cQ8VHQ4 Gm15045-201ENSMUST00000117359 883 ntBASIC24.33■■□□□ 1.49
Rab40cQ8VHQ4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Rab40cQ8VHQ4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.15■■□□□ 1.46
Rab40cQ8VHQ4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Rab40cQ8VHQ4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.12■■□□□ 1.45
Rab40cQ8VHQ4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.1■■□□□ 1.45
Rab40cQ8VHQ4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Rab40cQ8VHQ4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Rab40cQ8VHQ4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Rab40cQ8VHQ4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Rab40cQ8VHQ4 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.93■■□□□ 1.42
Rab40cQ8VHQ4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rab40cQ8VHQ4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Rab40cQ8VHQ4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.74■■□□□ 1.39
Rab40cQ8VHQ4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rab40cQ8VHQ4 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.72■■□□□ 1.39
Rab40cQ8VHQ4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Rab40cQ8VHQ4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.71■■□□□ 1.39
Rab40cQ8VHQ4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Rab40cQ8VHQ4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Rab40cQ8VHQ4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rab40cQ8VHQ4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Rab40cQ8VHQ4 Gm24109-201ENSMUST00000175489 103 ntBASIC23.54■■□□□ 1.36
Rab40cQ8VHQ4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Rab40cQ8VHQ4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Rab40cQ8VHQ4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Rab40cQ8VHQ4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Rab40cQ8VHQ4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Rab40cQ8VHQ4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Rab40cQ8VHQ4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Rab40cQ8VHQ4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Rab40cQ8VHQ4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Rab40cQ8VHQ4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Rab40cQ8VHQ4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.14■■□□□ 1.29
Rab40cQ8VHQ4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Rab40cQ8VHQ4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Rab40cQ8VHQ4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Rab40cQ8VHQ4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Rab40cQ8VHQ4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Rab40cQ8VHQ4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Rab40cQ8VHQ4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Rab40cQ8VHQ4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
Rab40cQ8VHQ4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Rab40cQ8VHQ4 Gm23366-201ENSMUST00000175022 89 ntBASIC22.95■■□□□ 1.26
Rab40cQ8VHQ4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Rab40cQ8VHQ4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Rab40cQ8VHQ4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Rab40cQ8VHQ4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Rab40cQ8VHQ4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Rab40cQ8VHQ4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rab40cQ8VHQ4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rab40cQ8VHQ4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Rab40cQ8VHQ4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Rab40cQ8VHQ4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Rab40cQ8VHQ4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.75■■□□□ 1.23
Rab40cQ8VHQ4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Rab40cQ8VHQ4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
Rab40cQ8VHQ4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Rab40cQ8VHQ4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Rab40cQ8VHQ4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Rab40cQ8VHQ4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.22
Rab40cQ8VHQ4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Rab40cQ8VHQ4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Rab40cQ8VHQ4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
Rab40cQ8VHQ4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.54■■□□□ 1.2
Rab40cQ8VHQ4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Rab40cQ8VHQ4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Rab40cQ8VHQ4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Rab40cQ8VHQ4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Rab40cQ8VHQ4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Rab40cQ8VHQ4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Rab40cQ8VHQ4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Rab40cQ8VHQ4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Rab40cQ8VHQ4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Rab40cQ8VHQ4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 116.7 ms