Protein–RNA interactions for Protein: Q8C1Q6

Smim4, Small integral membrane protein 4, mousemouse

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smim4Q8C1Q6 Gm25239-201ENSMUST00000174915 86 ntBASIC29.55■■■□□ 2.32
Smim4Q8C1Q6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Smim4Q8C1Q6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Smim4Q8C1Q6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
Smim4Q8C1Q6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Smim4Q8C1Q6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Smim4Q8C1Q6 Psd-208ENSMUST00000224556 2034 ntBASIC26.61■■□□□ 1.85
Smim4Q8C1Q6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Smim4Q8C1Q6 Gm15042-201ENSMUST00000120212 883 ntBASIC26.46■■□□□ 1.83
Smim4Q8C1Q6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Smim4Q8C1Q6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Smim4Q8C1Q6 Gm15045-201ENSMUST00000117359 883 ntBASIC25.93■■□□□ 1.74
Smim4Q8C1Q6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.81■■□□□ 1.72
Smim4Q8C1Q6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Smim4Q8C1Q6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Smim4Q8C1Q6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Smim4Q8C1Q6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Smim4Q8C1Q6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Smim4Q8C1Q6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Smim4Q8C1Q6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Smim4Q8C1Q6 Gm24109-201ENSMUST00000175489 103 ntBASIC25.29■■□□□ 1.64
Smim4Q8C1Q6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Smim4Q8C1Q6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Smim4Q8C1Q6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Smim4Q8C1Q6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
Smim4Q8C1Q6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.08■■□□□ 1.61
Smim4Q8C1Q6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Smim4Q8C1Q6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Smim4Q8C1Q6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.92■■□□□ 1.58
Smim4Q8C1Q6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Smim4Q8C1Q6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Smim4Q8C1Q6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Smim4Q8C1Q6 Gm23366-201ENSMUST00000175022 89 ntBASIC24.82■■□□□ 1.56
Smim4Q8C1Q6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Smim4Q8C1Q6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Smim4Q8C1Q6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Smim4Q8C1Q6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Smim4Q8C1Q6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Smim4Q8C1Q6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Smim4Q8C1Q6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smim4Q8C1Q6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.51■■□□□ 1.51
Smim4Q8C1Q6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.45■■□□□ 1.51
Smim4Q8C1Q6 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Smim4Q8C1Q6 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.41■■□□□ 1.5
Smim4Q8C1Q6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Smim4Q8C1Q6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Smim4Q8C1Q6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Smim4Q8C1Q6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smim4Q8C1Q6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.3■■□□□ 1.48
Smim4Q8C1Q6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Smim4Q8C1Q6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Smim4Q8C1Q6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Smim4Q8C1Q6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Smim4Q8C1Q6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.8■■□□□ 1.4
Smim4Q8C1Q6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.76■■□□□ 1.39
Smim4Q8C1Q6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Smim4Q8C1Q6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Smim4Q8C1Q6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Smim4Q8C1Q6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Smim4Q8C1Q6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smim4Q8C1Q6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Smim4Q8C1Q6 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.61■■□□□ 1.37
Smim4Q8C1Q6 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Smim4Q8C1Q6 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Smim4Q8C1Q6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
Smim4Q8C1Q6 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Smim4Q8C1Q6 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Smim4Q8C1Q6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Smim4Q8C1Q6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Smim4Q8C1Q6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Smim4Q8C1Q6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.39■■□□□ 1.34
Smim4Q8C1Q6 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Smim4Q8C1Q6 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Smim4Q8C1Q6 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Smim4Q8C1Q6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Smim4Q8C1Q6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC23.33■■□□□ 1.33
Smim4Q8C1Q6 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Smim4Q8C1Q6 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Smim4Q8C1Q6 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Smim4Q8C1Q6 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Smim4Q8C1Q6 Gm27325-201ENSMUST00000175467 74 ntBASIC23.3■■□□□ 1.32
Smim4Q8C1Q6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smim4Q8C1Q6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smim4Q8C1Q6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smim4Q8C1Q6 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Smim4Q8C1Q6 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Smim4Q8C1Q6 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Smim4Q8C1Q6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC23.11■■□□□ 1.29
Smim4Q8C1Q6 Gm25238-201ENSMUST00000174914 89 ntBASIC23.1■■□□□ 1.29
Smim4Q8C1Q6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Smim4Q8C1Q6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Smim4Q8C1Q6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
Smim4Q8C1Q6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Smim4Q8C1Q6 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Smim4Q8C1Q6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC23.02■■□□□ 1.28
Smim4Q8C1Q6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smim4Q8C1Q6 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
Smim4Q8C1Q6 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Smim4Q8C1Q6 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Smim4Q8C1Q6 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms