Protein–RNA interactions for Protein: Q8BI21

Rnf38, E3 ubiquitin-protein ligase RNF38, mousemouse

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf38Q8BI21 Gm25239-201ENSMUST00000174915 86 ntBASIC33.99■■■■□ 3.03
Rnf38Q8BI21 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Rnf38Q8BI21 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Rnf38Q8BI21 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
Rnf38Q8BI21 Psd-208ENSMUST00000224556 2034 ntBASIC31.33■■■□□ 2.61
Rnf38Q8BI21 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Rnf38Q8BI21 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Rnf38Q8BI21 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Rnf38Q8BI21 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Rnf38Q8BI21 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Rnf38Q8BI21 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Rnf38Q8BI21 Gm15042-201ENSMUST00000120212 883 ntBASIC30.34■■■□□ 2.45
Rnf38Q8BI21 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Rnf38Q8BI21 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Rnf38Q8BI21 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.96■■■□□ 2.39
Rnf38Q8BI21 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Rnf38Q8BI21 Gm15045-201ENSMUST00000117359 883 ntBASIC29.89■■■□□ 2.38
Rnf38Q8BI21 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Rnf38Q8BI21 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
Rnf38Q8BI21 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Rnf38Q8BI21 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Rnf38Q8BI21 Gm24109-201ENSMUST00000175489 103 ntBASIC29.29■■■□□ 2.28
Rnf38Q8BI21 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
Rnf38Q8BI21 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Rnf38Q8BI21 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
Rnf38Q8BI21 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Rnf38Q8BI21 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rnf38Q8BI21 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rnf38Q8BI21 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rnf38Q8BI21 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.04■■■□□ 2.24
Rnf38Q8BI21 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Rnf38Q8BI21 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Rnf38Q8BI21 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Rnf38Q8BI21 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.82■■■□□ 2.2
Rnf38Q8BI21 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.2
Rnf38Q8BI21 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Rnf38Q8BI21 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
Rnf38Q8BI21 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.63■■■□□ 2.17
Rnf38Q8BI21 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Rnf38Q8BI21 Gm23366-201ENSMUST00000175022 89 ntBASIC28.45■■■□□ 2.14
Rnf38Q8BI21 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Rnf38Q8BI21 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Rnf38Q8BI21 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Rnf38Q8BI21 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.32■■■□□ 2.12
Rnf38Q8BI21 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Rnf38Q8BI21 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Rnf38Q8BI21 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Rnf38Q8BI21 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.24■■■□□ 2.11
Rnf38Q8BI21 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.22■■■□□ 2.11
Rnf38Q8BI21 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Rnf38Q8BI21 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Rnf38Q8BI21 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Rnf38Q8BI21 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.95■■■□□ 2.06
Rnf38Q8BI21 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Rnf38Q8BI21 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.86■■■□□ 2.05
Rnf38Q8BI21 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Rnf38Q8BI21 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.77■■■□□ 2.04
Rnf38Q8BI21 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Rnf38Q8BI21 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Rnf38Q8BI21 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
Rnf38Q8BI21 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Rnf38Q8BI21 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Rnf38Q8BI21 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.62■■■□□ 2.01
Rnf38Q8BI21 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Rnf38Q8BI21 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.58■■■□□ 2.01
Rnf38Q8BI21 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
Rnf38Q8BI21 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
Rnf38Q8BI21 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Rnf38Q8BI21 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
Rnf38Q8BI21 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Rnf38Q8BI21 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Rnf38Q8BI21 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Rnf38Q8BI21 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
Rnf38Q8BI21 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.24■■□□□ 1.95
Rnf38Q8BI21 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Rnf38Q8BI21 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.94
Rnf38Q8BI21 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Rnf38Q8BI21 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Rnf38Q8BI21 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.08■■□□□ 1.93
Rnf38Q8BI21 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.07■■□□□ 1.92
Rnf38Q8BI21 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Rnf38Q8BI21 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.92■■□□□ 1.9
Rnf38Q8BI21 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Rnf38Q8BI21 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
Rnf38Q8BI21 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Rnf38Q8BI21 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Rnf38Q8BI21 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Rnf38Q8BI21 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Rnf38Q8BI21 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.83■■□□□ 1.89
Rnf38Q8BI21 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Rnf38Q8BI21 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Rnf38Q8BI21 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
Rnf38Q8BI21 Gm27325-201ENSMUST00000175467 74 ntBASIC26.77■■□□□ 1.88
Rnf38Q8BI21 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Rnf38Q8BI21 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Rnf38Q8BI21 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Rnf38Q8BI21 Gm25238-201ENSMUST00000174914 89 ntBASIC26.72■■□□□ 1.87
Rnf38Q8BI21 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Rnf38Q8BI21 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Rnf38Q8BI21 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.68■■□□□ 1.86
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms