Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Gm25239-201ENSMUST00000174915 86 ntBASIC28.37■■■□□ 2.13
Trav8d-1Q5R1H8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Trav8d-1Q5R1H8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Trav8d-1Q5R1H8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trav8d-1Q5R1H8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trav8d-1Q5R1H8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Trav8d-1Q5R1H8 Psd-208ENSMUST00000224556 2034 ntBASIC26.07■■□□□ 1.76
Trav8d-1Q5R1H8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trav8d-1Q5R1H8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trav8d-1Q5R1H8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Trav8d-1Q5R1H8 Gm15042-201ENSMUST00000120212 883 ntBASIC25.06■■□□□ 1.6
Trav8d-1Q5R1H8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Trav8d-1Q5R1H8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Trav8d-1Q5R1H8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Trav8d-1Q5R1H8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Trav8d-1Q5R1H8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trav8d-1Q5R1H8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trav8d-1Q5R1H8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Trav8d-1Q5R1H8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trav8d-1Q5R1H8 Gm15045-201ENSMUST00000117359 883 ntBASIC24.44■■□□□ 1.5
Trav8d-1Q5R1H8 Gm24109-201ENSMUST00000175489 103 ntBASIC24.42■■□□□ 1.5
Trav8d-1Q5R1H8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Trav8d-1Q5R1H8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trav8d-1Q5R1H8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Trav8d-1Q5R1H8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.1■■□□□ 1.45
Trav8d-1Q5R1H8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trav8d-1Q5R1H8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trav8d-1Q5R1H8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trav8d-1Q5R1H8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trav8d-1Q5R1H8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trav8d-1Q5R1H8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav8d-1Q5R1H8 Gm23366-201ENSMUST00000175022 89 ntBASIC23.81■■□□□ 1.4
Trav8d-1Q5R1H8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trav8d-1Q5R1H8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trav8d-1Q5R1H8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.65■■□□□ 1.38
Trav8d-1Q5R1H8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.64■■□□□ 1.38
Trav8d-1Q5R1H8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trav8d-1Q5R1H8 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav8d-1Q5R1H8 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.52■■□□□ 1.36
Trav8d-1Q5R1H8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Trav8d-1Q5R1H8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav8d-1Q5R1H8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trav8d-1Q5R1H8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trav8d-1Q5R1H8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trav8d-1Q5R1H8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trav8d-1Q5R1H8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trav8d-1Q5R1H8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Trav8d-1Q5R1H8 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.27■■□□□ 1.32
Trav8d-1Q5R1H8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav8d-1Q5R1H8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.26■■□□□ 1.31
Trav8d-1Q5R1H8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trav8d-1Q5R1H8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.22■■□□□ 1.31
Trav8d-1Q5R1H8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav8d-1Q5R1H8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav8d-1Q5R1H8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
Trav8d-1Q5R1H8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Trav8d-1Q5R1H8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Trav8d-1Q5R1H8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav8d-1Q5R1H8 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trav8d-1Q5R1H8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.97■■□□□ 1.27
Trav8d-1Q5R1H8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trav8d-1Q5R1H8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav8d-1Q5R1H8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.82■■□□□ 1.24
Trav8d-1Q5R1H8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Trav8d-1Q5R1H8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
Trav8d-1Q5R1H8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Trav8d-1Q5R1H8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav8d-1Q5R1H8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav8d-1Q5R1H8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trav8d-1Q5R1H8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav8d-1Q5R1H8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav8d-1Q5R1H8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.58■■□□□ 1.21
Trav8d-1Q5R1H8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Trav8d-1Q5R1H8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Trav8d-1Q5R1H8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.57■■□□□ 1.2
Trav8d-1Q5R1H8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
Trav8d-1Q5R1H8 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav8d-1Q5R1H8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav8d-1Q5R1H8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.46■■□□□ 1.19
Trav8d-1Q5R1H8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav8d-1Q5R1H8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav8d-1Q5R1H8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav8d-1Q5R1H8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.4■■□□□ 1.18
Trav8d-1Q5R1H8 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Trav8d-1Q5R1H8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trav8d-1Q5R1H8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav8d-1Q5R1H8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Trav8d-1Q5R1H8 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Trav8d-1Q5R1H8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav8d-1Q5R1H8 Gm25238-201ENSMUST00000174914 89 ntBASIC22.26■■□□□ 1.15
Trav8d-1Q5R1H8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22.25■■□□□ 1.15
Trav8d-1Q5R1H8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trav8d-1Q5R1H8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.23■■□□□ 1.15
Trav8d-1Q5R1H8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Trav8d-1Q5R1H8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav8d-1Q5R1H8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav8d-1Q5R1H8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav8d-1Q5R1H8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav8d-1Q5R1H8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trav8d-1Q5R1H8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 8 ms