Protein–RNA interactions for Protein: Q5R1D2

Trav15-1-dv6-1, T cell receptor alpha variable 15-1-DV6-1 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15-1-dv6-1Q5R1D2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Trav15-1-dv6-1Q5R1D2 Gm25239-201ENSMUST00000174915 86 ntBASIC26.09■■□□□ 1.77
Trav15-1-dv6-1Q5R1D2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
Trav15-1-dv6-1Q5R1D2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Trav15-1-dv6-1Q5R1D2 Psd-208ENSMUST00000224556 2034 ntBASIC25.19■■□□□ 1.62
Trav15-1-dv6-1Q5R1D2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Trav15-1-dv6-1Q5R1D2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trav15-1-dv6-1Q5R1D2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trav15-1-dv6-1Q5R1D2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Trav15-1-dv6-1Q5R1D2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trav15-1-dv6-1Q5R1D2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trav15-1-dv6-1Q5R1D2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trav15-1-dv6-1Q5R1D2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trav15-1-dv6-1Q5R1D2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.75■■□□□ 1.39
Trav15-1-dv6-1Q5R1D2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Trav15-1-dv6-1Q5R1D2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trav15-1-dv6-1Q5R1D2 Gm15042-201ENSMUST00000120212 883 ntBASIC23.66■■□□□ 1.38
Trav15-1-dv6-1Q5R1D2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Trav15-1-dv6-1Q5R1D2 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Trav15-1-dv6-1Q5R1D2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Trav15-1-dv6-1Q5R1D2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trav15-1-dv6-1Q5R1D2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trav15-1-dv6-1Q5R1D2 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Trav15-1-dv6-1Q5R1D2 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Trav15-1-dv6-1Q5R1D2 Gm15045-201ENSMUST00000117359 883 ntBASIC23.25■■□□□ 1.31
Trav15-1-dv6-1Q5R1D2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav15-1-dv6-1Q5R1D2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav15-1-dv6-1Q5R1D2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trav15-1-dv6-1Q5R1D2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23■■□□□ 1.27
Trav15-1-dv6-1Q5R1D2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.98■■□□□ 1.27
Trav15-1-dv6-1Q5R1D2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.96■■□□□ 1.27
Trav15-1-dv6-1Q5R1D2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trav15-1-dv6-1Q5R1D2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trav15-1-dv6-1Q5R1D2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trav15-1-dv6-1Q5R1D2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav15-1-dv6-1Q5R1D2 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.79■■□□□ 1.24
Trav15-1-dv6-1Q5R1D2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav15-1-dv6-1Q5R1D2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav15-1-dv6-1Q5R1D2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav15-1-dv6-1Q5R1D2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav15-1-dv6-1Q5R1D2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.59■■□□□ 1.21
Trav15-1-dv6-1Q5R1D2 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.56■■□□□ 1.2
Trav15-1-dv6-1Q5R1D2 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.55■■□□□ 1.2
Trav15-1-dv6-1Q5R1D2 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trav15-1-dv6-1Q5R1D2 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav15-1-dv6-1Q5R1D2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Trav15-1-dv6-1Q5R1D2 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trav15-1-dv6-1Q5R1D2 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trav15-1-dv6-1Q5R1D2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Trav15-1-dv6-1Q5R1D2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav15-1-dv6-1Q5R1D2 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav15-1-dv6-1Q5R1D2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trav15-1-dv6-1Q5R1D2 Gm24109-201ENSMUST00000175489 103 ntBASIC22.2■■□□□ 1.14
Trav15-1-dv6-1Q5R1D2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trav15-1-dv6-1Q5R1D2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trav15-1-dv6-1Q5R1D2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav15-1-dv6-1Q5R1D2 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav15-1-dv6-1Q5R1D2 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trav15-1-dv6-1Q5R1D2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.04■■□□□ 1.12
Trav15-1-dv6-1Q5R1D2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav15-1-dv6-1Q5R1D2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav15-1-dv6-1Q5R1D2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav15-1-dv6-1Q5R1D2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav15-1-dv6-1Q5R1D2 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Trav15-1-dv6-1Q5R1D2 Gm23366-201ENSMUST00000175022 89 ntBASIC21.94■■□□□ 1.1
Trav15-1-dv6-1Q5R1D2 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav15-1-dv6-1Q5R1D2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav15-1-dv6-1Q5R1D2 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav15-1-dv6-1Q5R1D2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav15-1-dv6-1Q5R1D2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav15-1-dv6-1Q5R1D2 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trav15-1-dv6-1Q5R1D2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav15-1-dv6-1Q5R1D2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.73■■□□□ 1.07
Trav15-1-dv6-1Q5R1D2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trav15-1-dv6-1Q5R1D2 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav15-1-dv6-1Q5R1D2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav15-1-dv6-1Q5R1D2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Trav15-1-dv6-1Q5R1D2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trav15-1-dv6-1Q5R1D2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trav15-1-dv6-1Q5R1D2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Trav15-1-dv6-1Q5R1D2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
Trav15-1-dv6-1Q5R1D2 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav15-1-dv6-1Q5R1D2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav15-1-dv6-1Q5R1D2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav15-1-dv6-1Q5R1D2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
Trav15-1-dv6-1Q5R1D2 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav15-1-dv6-1Q5R1D2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Trav15-1-dv6-1Q5R1D2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Trav15-1-dv6-1Q5R1D2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav15-1-dv6-1Q5R1D2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.43■■□□□ 1.02
Trav15-1-dv6-1Q5R1D2 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav15-1-dv6-1Q5R1D2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Trav15-1-dv6-1Q5R1D2 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav15-1-dv6-1Q5R1D2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav15-1-dv6-1Q5R1D2 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav15-1-dv6-1Q5R1D2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trav15-1-dv6-1Q5R1D2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav15-1-dv6-1Q5R1D2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trav15-1-dv6-1Q5R1D2 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav15-1-dv6-1Q5R1D2 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms