Protein–RNA interactions for Protein: A0N8R0

Trav12d-1, T cell receptor alpha variable 12D-1 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12d-1A0N8R0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Trav12d-1A0N8R0 Gm25239-201ENSMUST00000174915 86 ntBASIC27.81■■■□□ 2.04
Trav12d-1A0N8R0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Trav12d-1A0N8R0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
Trav12d-1A0N8R0 Psd-208ENSMUST00000224556 2034 ntBASIC26.21■■□□□ 1.79
Trav12d-1A0N8R0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trav12d-1A0N8R0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trav12d-1A0N8R0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trav12d-1A0N8R0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Trav12d-1A0N8R0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trav12d-1A0N8R0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Trav12d-1A0N8R0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Trav12d-1A0N8R0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Trav12d-1A0N8R0 Gm15042-201ENSMUST00000120212 883 ntBASIC25.09■■□□□ 1.61
Trav12d-1A0N8R0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Trav12d-1A0N8R0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trav12d-1A0N8R0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.95■■□□□ 1.58
Trav12d-1A0N8R0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trav12d-1A0N8R0 Gm15045-201ENSMUST00000117359 883 ntBASIC24.65■■□□□ 1.54
Trav12d-1A0N8R0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trav12d-1A0N8R0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trav12d-1A0N8R0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trav12d-1A0N8R0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Trav12d-1A0N8R0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trav12d-1A0N8R0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav12d-1A0N8R0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.2■■□□□ 1.46
Trav12d-1A0N8R0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Trav12d-1A0N8R0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trav12d-1A0N8R0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trav12d-1A0N8R0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trav12d-1A0N8R0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Trav12d-1A0N8R0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trav12d-1A0N8R0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.1■■□□□ 1.45
Trav12d-1A0N8R0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trav12d-1A0N8R0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.97■■□□□ 1.43
Trav12d-1A0N8R0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trav12d-1A0N8R0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trav12d-1A0N8R0 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.79■■□□□ 1.4
Trav12d-1A0N8R0 Gm24109-201ENSMUST00000175489 103 ntBASIC23.74■■□□□ 1.39
Trav12d-1A0N8R0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trav12d-1A0N8R0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.7■■□□□ 1.38
Trav12d-1A0N8R0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav12d-1A0N8R0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Trav12d-1A0N8R0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.44■■□□□ 1.34
Trav12d-1A0N8R0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav12d-1A0N8R0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trav12d-1A0N8R0 Gm23366-201ENSMUST00000175022 89 ntBASIC23.36■■□□□ 1.33
Trav12d-1A0N8R0 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.35■■□□□ 1.33
Trav12d-1A0N8R0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trav12d-1A0N8R0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trav12d-1A0N8R0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trav12d-1A0N8R0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trav12d-1A0N8R0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Trav12d-1A0N8R0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav12d-1A0N8R0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav12d-1A0N8R0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav12d-1A0N8R0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Trav12d-1A0N8R0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trav12d-1A0N8R0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav12d-1A0N8R0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trav12d-1A0N8R0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.08■■□□□ 1.28
Trav12d-1A0N8R0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Trav12d-1A0N8R0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23.04■■□□□ 1.28
Trav12d-1A0N8R0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trav12d-1A0N8R0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav12d-1A0N8R0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Trav12d-1A0N8R0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trav12d-1A0N8R0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trav12d-1A0N8R0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
Trav12d-1A0N8R0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trav12d-1A0N8R0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trav12d-1A0N8R0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav12d-1A0N8R0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Trav12d-1A0N8R0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trav12d-1A0N8R0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav12d-1A0N8R0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav12d-1A0N8R0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
Trav12d-1A0N8R0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav12d-1A0N8R0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav12d-1A0N8R0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav12d-1A0N8R0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Trav12d-1A0N8R0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav12d-1A0N8R0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trav12d-1A0N8R0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav12d-1A0N8R0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav12d-1A0N8R0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav12d-1A0N8R0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav12d-1A0N8R0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Trav12d-1A0N8R0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.34■■□□□ 1.17
Trav12d-1A0N8R0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav12d-1A0N8R0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav12d-1A0N8R0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Trav12d-1A0N8R0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trav12d-1A0N8R0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav12d-1A0N8R0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav12d-1A0N8R0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav12d-1A0N8R0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.21■■□□□ 1.15
Trav12d-1A0N8R0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trav12d-1A0N8R0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Trav12d-1A0N8R0 Gm27325-201ENSMUST00000175467 74 ntBASIC22.14■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms