Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Gm25239-201ENSMUST00000174915 86 ntBASIC28.48■■■□□ 2.15
Trav6d-3A0A075B6B3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Trav6d-3A0A075B6B3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trav6d-3A0A075B6B3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
Trav6d-3A0A075B6B3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Trav6d-3A0A075B6B3 Psd-208ENSMUST00000224556 2034 ntBASIC25.98■■□□□ 1.75
Trav6d-3A0A075B6B3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trav6d-3A0A075B6B3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trav6d-3A0A075B6B3 Gm15042-201ENSMUST00000120212 883 ntBASIC25.55■■□□□ 1.68
Trav6d-3A0A075B6B3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trav6d-3A0A075B6B3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Trav6d-3A0A075B6B3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Trav6d-3A0A075B6B3 Gm15045-201ENSMUST00000117359 883 ntBASIC25.08■■□□□ 1.61
Trav6d-3A0A075B6B3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.05■■□□□ 1.6
Trav6d-3A0A075B6B3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Trav6d-3A0A075B6B3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trav6d-3A0A075B6B3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Trav6d-3A0A075B6B3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav6d-3A0A075B6B3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trav6d-3A0A075B6B3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Trav6d-3A0A075B6B3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trav6d-3A0A075B6B3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Trav6d-3A0A075B6B3 Gm24109-201ENSMUST00000175489 103 ntBASIC24.38■■□□□ 1.49
Trav6d-3A0A075B6B3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav6d-3A0A075B6B3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trav6d-3A0A075B6B3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trav6d-3A0A075B6B3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.35■■□□□ 1.49
Trav6d-3A0A075B6B3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trav6d-3A0A075B6B3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Trav6d-3A0A075B6B3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.18■■□□□ 1.46
Trav6d-3A0A075B6B3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trav6d-3A0A075B6B3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trav6d-3A0A075B6B3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trav6d-3A0A075B6B3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trav6d-3A0A075B6B3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Trav6d-3A0A075B6B3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav6d-3A0A075B6B3 Gm23366-201ENSMUST00000175022 89 ntBASIC23.9■■□□□ 1.42
Trav6d-3A0A075B6B3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Trav6d-3A0A075B6B3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.82■■□□□ 1.4
Trav6d-3A0A075B6B3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.79■■□□□ 1.4
Trav6d-3A0A075B6B3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Trav6d-3A0A075B6B3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav6d-3A0A075B6B3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav6d-3A0A075B6B3 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.73■■□□□ 1.39
Trav6d-3A0A075B6B3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Trav6d-3A0A075B6B3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav6d-3A0A075B6B3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Trav6d-3A0A075B6B3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Trav6d-3A0A075B6B3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Trav6d-3A0A075B6B3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23.43■■□□□ 1.34
Trav6d-3A0A075B6B3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trav6d-3A0A075B6B3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav6d-3A0A075B6B3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.16■■□□□ 1.3
Trav6d-3A0A075B6B3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav6d-3A0A075B6B3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.1■■□□□ 1.29
Trav6d-3A0A075B6B3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trav6d-3A0A075B6B3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav6d-3A0A075B6B3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav6d-3A0A075B6B3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trav6d-3A0A075B6B3 Gm42596-201ENSMUST00000196305 1958 ntBASIC23■■□□□ 1.27
Trav6d-3A0A075B6B3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Trav6d-3A0A075B6B3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trav6d-3A0A075B6B3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Trav6d-3A0A075B6B3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Trav6d-3A0A075B6B3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav6d-3A0A075B6B3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav6d-3A0A075B6B3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trav6d-3A0A075B6B3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.82■■□□□ 1.24
Trav6d-3A0A075B6B3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav6d-3A0A075B6B3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav6d-3A0A075B6B3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
Trav6d-3A0A075B6B3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav6d-3A0A075B6B3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trav6d-3A0A075B6B3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trav6d-3A0A075B6B3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Trav6d-3A0A075B6B3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.62■■□□□ 1.21
Trav6d-3A0A075B6B3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav6d-3A0A075B6B3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav6d-3A0A075B6B3 Gm27325-201ENSMUST00000175467 74 ntBASIC22.5■■□□□ 1.19
Trav6d-3A0A075B6B3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav6d-3A0A075B6B3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav6d-3A0A075B6B3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav6d-3A0A075B6B3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.46■■□□□ 1.19
Trav6d-3A0A075B6B3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav6d-3A0A075B6B3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav6d-3A0A075B6B3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Trav6d-3A0A075B6B3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav6d-3A0A075B6B3 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trav6d-3A0A075B6B3 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Trav6d-3A0A075B6B3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6d-3A0A075B6B3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav6d-3A0A075B6B3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav6d-3A0A075B6B3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Trav6d-3A0A075B6B3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trav6d-3A0A075B6B3 Gm25238-201ENSMUST00000174914 89 ntBASIC22.24■■□□□ 1.15
Trav6d-3A0A075B6B3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav6d-3A0A075B6B3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav6d-3A0A075B6B3 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav6d-3A0A075B6B3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav6d-3A0A075B6B3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.2■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms