Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Gm25239-201ENSMUST00000174915 86 ntBASIC33.64■■■□□ 2.98
Trav1A0A075B5Z4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Trav1A0A075B5Z4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Trav1A0A075B5Z4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
Trav1A0A075B5Z4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Trav1A0A075B5Z4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Trav1A0A075B5Z4 Psd-208ENSMUST00000224556 2034 ntBASIC30.22■■■□□ 2.43
Trav1A0A075B5Z4 Gm15042-201ENSMUST00000120212 883 ntBASIC30.06■■■□□ 2.4
Trav1A0A075B5Z4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Trav1A0A075B5Z4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
Trav1A0A075B5Z4 Gm15045-201ENSMUST00000117359 883 ntBASIC29.54■■■□□ 2.32
Trav1A0A075B5Z4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Trav1A0A075B5Z4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.31■■■□□ 2.28
Trav1A0A075B5Z4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Trav1A0A075B5Z4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Trav1A0A075B5Z4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Trav1A0A075B5Z4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Trav1A0A075B5Z4 Gm24109-201ENSMUST00000175489 103 ntBASIC28.88■■■□□ 2.21
Trav1A0A075B5Z4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Trav1A0A075B5Z4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
Trav1A0A075B5Z4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Trav1A0A075B5Z4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trav1A0A075B5Z4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Trav1A0A075B5Z4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
Trav1A0A075B5Z4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.51■■■□□ 2.16
Trav1A0A075B5Z4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
Trav1A0A075B5Z4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Trav1A0A075B5Z4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Trav1A0A075B5Z4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
Trav1A0A075B5Z4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.26■■■□□ 2.11
Trav1A0A075B5Z4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Trav1A0A075B5Z4 Gm23366-201ENSMUST00000175022 89 ntBASIC28.2■■■□□ 2.1
Trav1A0A075B5Z4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Trav1A0A075B5Z4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
Trav1A0A075B5Z4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Trav1A0A075B5Z4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Trav1A0A075B5Z4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Trav1A0A075B5Z4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
Trav1A0A075B5Z4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
Trav1A0A075B5Z4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Trav1A0A075B5Z4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.77■■■□□ 2.04
Trav1A0A075B5Z4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.74■■■□□ 2.03
Trav1A0A075B5Z4 Gm10524-201ENSMUST00000181931 1893 ntBASIC27.62■■■□□ 2.01
Trav1A0A075B5Z4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Trav1A0A075B5Z4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
Trav1A0A075B5Z4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Trav1A0A075B5Z4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
Trav1A0A075B5Z4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.58■■■□□ 2.01
Trav1A0A075B5Z4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Trav1A0A075B5Z4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Trav1A0A075B5Z4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Trav1A0A075B5Z4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Trav1A0A075B5Z4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Trav1A0A075B5Z4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.96■■□□□ 1.91
Trav1A0A075B5Z4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trav1A0A075B5Z4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.93■■□□□ 1.9
Trav1A0A075B5Z4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
Trav1A0A075B5Z4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Trav1A0A075B5Z4 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.83■■□□□ 1.89
Trav1A0A075B5Z4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Trav1A0A075B5Z4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
Trav1A0A075B5Z4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Trav1A0A075B5Z4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
Trav1A0A075B5Z4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trav1A0A075B5Z4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Trav1A0A075B5Z4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.62■■□□□ 1.85
Trav1A0A075B5Z4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trav1A0A075B5Z4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Trav1A0A075B5Z4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trav1A0A075B5Z4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trav1A0A075B5Z4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.54■■□□□ 1.84
Trav1A0A075B5Z4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
Trav1A0A075B5Z4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trav1A0A075B5Z4 Gm27325-201ENSMUST00000175467 74 ntBASIC26.49■■□□□ 1.83
Trav1A0A075B5Z4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trav1A0A075B5Z4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trav1A0A075B5Z4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Trav1A0A075B5Z4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trav1A0A075B5Z4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trav1A0A075B5Z4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trav1A0A075B5Z4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trav1A0A075B5Z4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trav1A0A075B5Z4 Gm25238-201ENSMUST00000174914 89 ntBASIC26.35■■□□□ 1.81
Trav1A0A075B5Z4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.23■■□□□ 1.79
Trav1A0A075B5Z4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
Trav1A0A075B5Z4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trav1A0A075B5Z4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Trav1A0A075B5Z4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.17■■□□□ 1.78
Trav1A0A075B5Z4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Trav1A0A075B5Z4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trav1A0A075B5Z4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trav1A0A075B5Z4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trav1A0A075B5Z4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trav1A0A075B5Z4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
Trav1A0A075B5Z4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trav1A0A075B5Z4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trav1A0A075B5Z4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trav1A0A075B5Z4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trav1A0A075B5Z4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trav1A0A075B5Z4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 8.4 ms