Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-620P-201ENST00000384017 96 ntBASIC-3.48□□□□□ -2.97
USF3Q68DE3 RNU6-886P-201ENST00000384319 105 ntBASIC-3.48□□□□□ -2.97
USF3Q68DE3 RNU6-539P-201ENST00000516665 103 ntBASIC-3.48□□□□□ -2.97
USF3Q68DE3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-3.48□□□□□ -2.97
USF3Q68DE3 Y_RNA.61-201ENST00000362835 102 ntBASIC-3.48□□□□□ -2.97
USF3Q68DE3 RNU6-1024P-201ENST00000384199 107 ntBASIC-3.48□□□□□ -2.97
USF3Q68DE3 MT-TG-201ENST00000387429 68 ntBASIC-3.49□□□□□ -2.97
USF3Q68DE3 RNY1P5-201ENST00000383890 115 ntBASIC-3.5□□□□□ -2.97
USF3Q68DE3 U7.4-201ENST00000614961 63 ntBASIC-3.51□□□□□ -2.97
USF3Q68DE3 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.52□□□□□ -2.97
USF3Q68DE3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-3.52□□□□□ -2.97
USF3Q68DE3 RNU6-346P-201ENST00000516288 111 ntBASIC-3.52□□□□□ -2.97
USF3Q68DE3 RNU6-640P-201ENST00000363693 105 ntBASIC-3.52□□□□□ -2.97
USF3Q68DE3 AC114801.3-201ENST00000510231 177 ntBASIC-3.52□□□□□ -2.97
USF3Q68DE3 MIR488-201ENST00000365739 83 ntBASIC-3.53□□□□□ -2.97
USF3Q68DE3 IGLL4P-201ENST00000614590 133 ntBASIC-3.53□□□□□ -2.97
USF3Q68DE3 SNORD30.1-201ENST00000391309 70 ntBASIC-3.54□□□□□ -2.98
USF3Q68DE3 RNU6-787P-201ENST00000384032 107 ntBASIC-3.55□□□□□ -2.98
USF3Q68DE3 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.56□□□□□ -2.98
USF3Q68DE3 RNU6-871P-201ENST00000516122 100 ntBASIC-3.56□□□□□ -2.98
USF3Q68DE3 RNU6-446P-201ENST00000362827 106 ntBASIC-3.59□□□□□ -2.98
USF3Q68DE3 RNU6-327P-201ENST00000516270 127 ntBASIC-3.6□□□□□ -2.99
USF3Q68DE3 RNU6-838P-201ENST00000363399 108 ntBASIC-3.61□□□□□ -2.99
USF3Q68DE3 RNU6-1168P-201ENST00000390831 104 ntBASIC-3.62□□□□□ -2.99
USF3Q68DE3 U6.111-201ENST00000636093 83 ntBASIC-3.64□□□□□ -2.99
USF3Q68DE3 MIR4503-201ENST00000582187 83 ntBASIC-3.64□□□□□ -2.99
USF3Q68DE3 SNORD113-4-201ENST00000364802 75 ntBASIC-3.66□□□□□ -3
USF3Q68DE3 RNU6-471P-201ENST00000383944 106 ntBASIC-3.66□□□□□ -3
USF3Q68DE3 RNU6-32P-201ENST00000383948 107 ntBASIC-3.67□□□□□ -3
USF3Q68DE3 RNU6-13P-201ENST00000384248 107 ntBASIC-3.67□□□□□ -3
USF3Q68DE3 RNU6-49P-201ENST00000384256 107 ntBASIC-3.67□□□□□ -3
USF3Q68DE3 RNU6-12P-201ENST00000384604 107 ntBASIC-3.67□□□□□ -3
USF3Q68DE3 RNU6-41P-201ENST00000384741 107 ntBASIC-3.67□□□□□ -3
USF3Q68DE3 MIR450A2-201ENST00000385022 100 ntBASIC-3.68□□□□□ -3
USF3Q68DE3 RNU6-485P-201ENST00000363475 107 ntBASIC-3.7□□□□□ -3
USF3Q68DE3 RNU6-1045P-201ENST00000516321 107 ntBASIC-3.7□□□□□ -3
USF3Q68DE3 Y_RNA.464-201ENST00000384282 110 ntBASIC-3.7□□□□□ -3
USF3Q68DE3 RNU6-153P-201ENST00000364422 104 ntBASIC-3.71□□□□□ -3
USF3Q68DE3 RNY4P30-201ENST00000410216 95 ntBASIC-3.71□□□□□ -3
USF3Q68DE3 AL365222.1-201ENST00000614661 98 ntBASIC-3.72□□□□□ -3
USF3Q68DE3 RNU6-294P-201ENST00000364999 102 ntBASIC-3.72□□□□□ -3.01
USF3Q68DE3 RNU6-147P-201ENST00000383983 107 ntBASIC-3.73□□□□□ -3.01
USF3Q68DE3 Y_RNA.261-201ENST00000364631 102 ntBASIC-3.74□□□□□ -3.01
USF3Q68DE3 RNU6-894P-201ENST00000517094 105 ntBASIC-3.75□□□□□ -3.01
USF3Q68DE3 RNU6-829P-201ENST00000363700 112 ntBASIC-3.75□□□□□ -3.01
USF3Q68DE3 RNU6-22P-201ENST00000384355 107 ntBASIC-3.76□□□□□ -3.01
USF3Q68DE3 RNU6-242P-201ENST00000384359 107 ntBASIC-3.76□□□□□ -3.01
USF3Q68DE3 RNU6-1154P-201ENST00000391001 104 ntBASIC-3.76□□□□□ -3.01
USF3Q68DE3 RNU6-820P-201ENST00000384273 107 ntBASIC-3.79□□□□□ -3.02
USF3Q68DE3 RNU6-81P-201ENST00000365608 104 ntBASIC-3.8□□□□□ -3.02
USF3Q68DE3 MIR1255A-201ENST00000408338 113 ntBASIC-3.81□□□□□ -3.02
USF3Q68DE3 Y_RNA.703-201ENST00000516846 111 ntBASIC-3.81□□□□□ -3.02
USF3Q68DE3 RNU6-279P-201ENST00000391297 101 ntBASIC-3.82□□□□□ -3.02
USF3Q68DE3 RNU6-1091P-201ENST00000363945 107 ntBASIC-3.82□□□□□ -3.02
USF3Q68DE3 RNU6-463P-201ENST00000384340 107 ntBASIC-3.85□□□□□ -3.02
USF3Q68DE3 SNORA26.2-201ENST00000390922 122 ntBASIC-3.85□□□□□ -3.03
USF3Q68DE3 MIR3202-2-201ENST00000635980 79 ntBASIC-3.86□□□□□ -3.03
USF3Q68DE3 RNU6-930P-201ENST00000390938 100 ntBASIC-3.87□□□□□ -3.03
USF3Q68DE3 RNA5SP89-201ENST00000410300 108 ntBASIC-3.87□□□□□ -3.03
USF3Q68DE3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.87□□□□□ -3.03
USF3Q68DE3 SNORD111B-201ENST00000408587 80 ntBASIC-3.88□□□□□ -3.03
USF3Q68DE3 RNU6-1117P-201ENST00000384525 104 ntBASIC-3.89□□□□□ -3.03
USF3Q68DE3 RNU6-753P-201ENST00000363926 107 ntBASIC-3.9□□□□□ -3.03
USF3Q68DE3 RNU6-857P-201ENST00000515893 110 ntBASIC-3.93□□□□□ -3.04
USF3Q68DE3 Y_RNA.386-201ENST00000383913 105 ntBASIC-3.94□□□□□ -3.04
USF3Q68DE3 RNY4P19-201ENST00000362530 96 ntBASIC-3.95□□□□□ -3.04
USF3Q68DE3 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.95□□□□□ -3.04
USF3Q68DE3 MIR633-201ENST00000384821 98 ntBASIC-3.95□□□□□ -3.04
USF3Q68DE3 MIR548F3-201ENST00000408509 87 ntBASIC-3.95□□□□□ -3.04
USF3Q68DE3 RNU6-919P-201ENST00000516731 104 ntBASIC-3.96□□□□□ -3.04
USF3Q68DE3 RNU6-892P-201ENST00000410335 99 ntBASIC-3.98□□□□□ -3.05
USF3Q68DE3 U6.103-201ENST00000637085 61 ntBASIC-3.98□□□□□ -3.05
USF3Q68DE3 MIR3133-201ENST00000583157 78 ntBASIC-3.98□□□□□ -3.05
USF3Q68DE3 DLEU2_4.2-201ENST00000616613 58 ntBASIC-3.99□□□□□ -3.05
USF3Q68DE3 RNU6-936P-201ENST00000384005 107 ntBASIC-4.03□□□□□ -3.05
USF3Q68DE3 SNORD20-201ENST00000384550 80 ntBASIC-4.05□□□□□ -3.06
USF3Q68DE3 RNU6-406P-201ENST00000516470 107 ntBASIC-4.07□□□□□ -3.06
USF3Q68DE3 Y_RNA.694-201ENST00000516677 117 ntBASIC-4.09□□□□□ -3.06
USF3Q68DE3 RNU6-133P-201ENST00000383989 107 ntBASIC-4.1□□□□□ -3.07
USF3Q68DE3 RNU6-1275P-201ENST00000391087 107 ntBASIC-4.1□□□□□ -3.07
USF3Q68DE3 RNU6-313P-201ENST00000516317 112 ntBASIC-4.1□□□□□ -3.07
USF3Q68DE3 Y_RNA.369-201ENST00000365568 117 ntBASIC-4.13□□□□□ -3.07
USF3Q68DE3 MIR4662A-201ENST00000637499 67 ntBASIC-4.15□□□□□ -3.07
USF3Q68DE3 MIR5582-201ENST00000579697 68 ntBASIC-4.16□□□□□ -3.08
USF3Q68DE3 RNU6-499P-201ENST00000365615 107 ntBASIC-4.18□□□□□ -3.08
USF3Q68DE3 RNU6-44P-201ENST00000384045 107 ntBASIC-4.19□□□□□ -3.08
USF3Q68DE3 RNA5SP225-201ENST00000410874 135 ntBASIC-4.19□□□□□ -3.08
USF3Q68DE3 AC079150.2-201ENST00000443733 78 ntBASIC-4.19□□□□□ -3.08
USF3Q68DE3 MIR3671-201ENST00000580455 88 ntBASIC-4.19□□□□□ -3.08
USF3Q68DE3 RNU6-215P-201ENST00000365169 102 ntBASIC-4.21□□□□□ -3.08
USF3Q68DE3 RNU6-794P-201ENST00000517261 64 ntBASIC-4.21□□□□□ -3.08
USF3Q68DE3 MIR548M-201ENST00000408260 86 ntBASIC-4.22□□□□□ -3.08
USF3Q68DE3 SNORD78.1-201ENST00000390866 65 ntBASIC-4.22□□□□□ -3.09
USF3Q68DE3 RNU6-614P-201ENST00000384369 107 ntBASIC-4.23□□□□□ -3.09
USF3Q68DE3 U6.59-201ENST00000615686 107 ntBASIC-4.23□□□□□ -3.09
USF3Q68DE3 RNU6-1011P-201ENST00000384668 107 ntBASIC-4.23□□□□□ -3.09
USF3Q68DE3 MIR3910-1-201ENST00000580936 111 ntBASIC-4.25□□□□□ -3.09
USF3Q68DE3 Y_RNA.388-201ENST00000383919 113 ntBASIC-4.3□□□□□ -3.1
USF3Q68DE3 AC125388.1-201ENST00000459631 156 ntBASIC-4.3□□□□□ -3.1
USF3Q68DE3 RNU6-573P-201ENST00000383938 106 ntBASIC-4.31□□□□□ -3.1
Retrieved 100 of 98,524 protein–RNA pairs in 257.5 ms