Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR494-201ENST00000349529 81 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNY4P7-201ENST00000364600 96 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNU6-563P-201ENST00000364872 108 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNU6-542P-201ENST00000516405 103 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-669P-201ENST00000365575 107 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-172P-201ENST00000411000 93 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 AC120024.2-201ENST00000576526 175 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-294P-201ENST00000364999 102 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 AC005520.4-201ENST00000604337 90 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 SNORA27.2-201ENST00000363365 126 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-895P-201ENST00000384125 103 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-242P-201ENST00000384359 107 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-523P-201ENST00000516304 54 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-92P-201ENST00000605893 104 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-247P-201ENST00000362636 107 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 RNU6-411P-201ENST00000384451 107 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 RNU6-695P-201ENST00000391157 104 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 SNORD60.1-201ENST00000362451 73 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-820P-201ENST00000384273 107 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-540P-201ENST00000384622 101 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 MIR579-201ENST00000385221 98 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-995P-201ENST00000391244 107 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 AC062037.1-201ENST00000605302 128 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-226P-201ENST00000363778 107 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU6-974P-201ENST00000384099 108 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 MIR548H1-201ENST00000408610 102 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU6-634P-201ENST00000459134 106 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 SNORD63.2-201ENST00000516303 64 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU7-160P-201ENST00000516660 62 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 MIR5582-201ENST00000579697 68 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 AC013734.1-201ENST00000619329 111 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 MIR487B-201ENST00000385021 84 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 MIR3123-201ENST00000583417 75 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 RNU6-841P-201ENST00000383872 107 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 RNU6-231P-201ENST00000517122 103 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 U7.4-201ENST00000614961 63 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.18□□□□□ -2.6
CTCFP49711 RNY3P8-201ENST00000411366 126 ntBASIC-1.18□□□□□ -2.6
CTCFP49711 RNU6-122P-201ENST00000516818 107 ntBASIC-1.19□□□□□ -2.6
CTCFP49711 MIR7110-201ENST00000612638 86 ntBASIC-1.19□□□□□ -2.6
CTCFP49711 RNU6-663P-201ENST00000391105 106 ntBASIC-1.2□□□□□ -2.6
CTCFP49711 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 SNORA25.4-201ENST00000363666 124 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 SNORA25.5-201ENST00000363782 126 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-810P-201ENST00000364001 107 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-828P-201ENST00000364876 107 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 MIR548AM-201ENST00000584298 74 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 AC108019.1-201ENST00000512540 175 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 SNORA40.16-201ENST00000517238 121 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 MIR3202-2-201ENST00000635980 79 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 SNORD18.1-201ENST00000363807 70 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 MIR581-201ENST00000384895 96 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 SNORA40B-201ENST00000385573 128 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 RNU6-279P-201ENST00000391297 101 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 RNU6-520P-201ENST00000384717 104 ntBASIC-1.24□□□□□ -2.61
CTCFP49711 RNU6-228P-201ENST00000362700 106 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 MIR548N-201ENST00000408742 75 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 RNU6-857P-201ENST00000515893 110 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 MIR4511-201ENST00000582784 87 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 SNORD18C-201ENST00000362704 69 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 RNU6-361P-201ENST00000364454 107 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 SNORD116.2-201ENST00000391251 93 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 MIR548W-201ENST00000581970 74 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 U6.97-201ENST00000636904 101 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 SNORD73B-201ENST00000364394 72 ntBASIC-1.27□□□□□ -2.61
CTCFP49711 MIR4756-201ENST00000577874 78 ntBASIC-1.27□□□□□ -2.61
CTCFP49711 MIR202-201ENST00000362219 110 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 MIR1255A-201ENST00000408338 113 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNA5SP170-201ENST00000517150 101 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 MIR664B-201ENST00000626756 61 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 U6.111-201ENST00000636093 83 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 AC103706.3-201ENST00000636297 85 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNU6-573P-201ENST00000383938 106 ntBASIC-1.29□□□□□ -2.62
CTCFP49711 SNORD30.1-201ENST00000391309 70 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms