Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.13□□□□□ -2.59
TNFRSF4P43489 RNU6-663P-201ENST00000391105 106 ntBASIC-1.13□□□□□ -2.59
TNFRSF4P43489 MIR5591-201ENST00000578248 65 ntBASIC-1.13□□□□□ -2.59
TNFRSF4P43489 SNORD1B-201ENST00000363091 84 ntBASIC-1.14□□□□□ -2.59
TNFRSF4P43489 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.14□□□□□ -2.59
TNFRSF4P43489 MIR548AA1-201ENST00000384971 97 ntBASIC-1.14□□□□□ -2.59
TNFRSF4P43489 RNU6-226P-201ENST00000363778 107 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 RNU6-279P-201ENST00000391297 101 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 SNORD30.1-201ENST00000391309 70 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 MIR889-201ENST00000401280 79 ntBASIC-1.15□□□□□ -2.59
TNFRSF4P43489 RNU6-540P-201ENST00000384622 101 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.16□□□□□ -2.6
TNFRSF4P43489 SNORD78.1-201ENST00000390866 65 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 RNU6-995P-201ENST00000391244 107 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 MIR1302-4-201ENST00000408701 150 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 RNU7-134P-201ENST00000458997 64 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 RNU6-871P-201ENST00000516122 100 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 RNU6-92P-201ENST00000605893 104 ntBASIC-1.16□□□□□ -2.6
TNFRSF4P43489 RNU6-247P-201ENST00000362636 107 ntBASIC-1.17□□□□□ -2.6
TNFRSF4P43489 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.17□□□□□ -2.6
TNFRSF4P43489 MIR4770-201ENST00000579149 58 ntBASIC-1.17□□□□□ -2.6
TNFRSF4P43489 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.18□□□□□ -2.6
TNFRSF4P43489 RNU6-172P-201ENST00000411000 93 ntBASIC-1.18□□□□□ -2.6
TNFRSF4P43489 AC090616.4-201ENST00000448026 115 ntBASIC-1.18□□□□□ -2.6
TNFRSF4P43489 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.18□□□□□ -2.6
TNFRSF4P43489 RNU6-164P-201ENST00000364604 103 ntBASIC-1.19□□□□□ -2.6
TNFRSF4P43489 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.19□□□□□ -2.6
TNFRSF4P43489 RNA5SP225-201ENST00000410874 135 ntBASIC-1.19□□□□□ -2.6
TNFRSF4P43489 MIR3170-201ENST00000582699 77 ntBASIC-1.2□□□□□ -2.6
TNFRSF4P43489 SNORA25.4-201ENST00000363666 124 ntBASIC-1.21□□□□□ -2.6
TNFRSF4P43489 MIR520D-201ENST00000385002 87 ntBASIC-1.21□□□□□ -2.6
TNFRSF4P43489 MIR579-201ENST00000385221 98 ntBASIC-1.21□□□□□ -2.6
TNFRSF4P43489 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.21□□□□□ -2.6
TNFRSF4P43489 MIR4679-1-201ENST00000637619 75 ntBASIC-1.21□□□□□ -2.6
TNFRSF4P43489 RNU7-151P-201ENST00000516930 53 ntBASIC-1.22□□□□□ -2.6
TNFRSF4P43489 SNORD60.1-201ENST00000362451 73 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 RNY4P7-201ENST00000364600 96 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 RNU6-608P-201ENST00000383927 104 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 RNU6-649P-201ENST00000384463 107 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 AC018880.2-201ENST00000414265 201 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 RNU6-523P-201ENST00000516304 54 ntBASIC-1.23□□□□□ -2.61
TNFRSF4P43489 RNU6-983P-201ENST00000516004 103 ntBASIC-1.24□□□□□ -2.61
TNFRSF4P43489 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.24□□□□□ -2.61
TNFRSF4P43489 AC091912.2-201ENST00000624798 167 ntBASIC-1.25□□□□□ -2.61
TNFRSF4P43489 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.26□□□□□ -2.61
TNFRSF4P43489 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.26□□□□□ -2.61
TNFRSF4P43489 SNORA25.5-201ENST00000363782 126 ntBASIC-1.27□□□□□ -2.61
TNFRSF4P43489 MIR6874-201ENST00000635894 71 ntBASIC-1.27□□□□□ -2.61
TNFRSF4P43489 U6.111-201ENST00000636093 83 ntBASIC-1.28□□□□□ -2.61
TNFRSF4P43489 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 MIR496-201ENST00000385226 102 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 SNORD63.2-201ENST00000516303 64 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 RNU6-539P-201ENST00000516665 103 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 MIR23C-201ENST00000579846 100 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 AC005520.4-201ENST00000604337 90 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 MIR4662A-201ENST00000637499 67 ntBASIC-1.29□□□□□ -2.62
TNFRSF4P43489 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.3□□□□□ -2.62
TNFRSF4P43489 MIR7110-201ENST00000612638 86 ntBASIC-1.3□□□□□ -2.62
TNFRSF4P43489 RNU6-776P-201ENST00000364403 104 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 SNORD116.2-201ENST00000391251 93 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 MIR8485-201ENST00000401372 91 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 RNU6-231P-201ENST00000517122 103 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 MIR7978-201ENST00000636158 59 ntBASIC-1.31□□□□□ -2.62
TNFRSF4P43489 RNU6-669P-201ENST00000365575 107 ntBASIC-1.32□□□□□ -2.62
TNFRSF4P43489 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.33□□□□□ -2.62
TNFRSF4P43489 RNU6-258P-201ENST00000390884 101 ntBASIC-1.33□□□□□ -2.62
TNFRSF4P43489 RNU6-122P-201ENST00000516818 107 ntBASIC-1.33□□□□□ -2.62
TNFRSF4P43489 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.34□□□□□ -2.62
TNFRSF4P43489 MIR4520-1-201ENST00000582609 70 ntBASIC-1.34□□□□□ -2.62
TNFRSF4P43489 MIR4511-201ENST00000582784 87 ntBASIC-1.34□□□□□ -2.62
TNFRSF4P43489 MIR125B1-201ENST00000385236 88 ntBASIC-1.35□□□□□ -2.63
TNFRSF4P43489 SNORD54-201ENST00000459159 67 ntBASIC-1.35□□□□□ -2.63
TNFRSF4P43489 RNU7-160P-201ENST00000516660 62 ntBASIC-1.35□□□□□ -2.63
TNFRSF4P43489 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.35□□□□□ -2.63
TNFRSF4P43489 AC103706.3-201ENST00000636297 85 ntBASIC-1.35□□□□□ -2.63
TNFRSF4P43489 SNORD18.1-201ENST00000363807 70 ntBASIC-1.36□□□□□ -2.63
TNFRSF4P43489 RNU6-810P-201ENST00000364001 107 ntBASIC-1.36□□□□□ -2.63
TNFRSF4P43489 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.36□□□□□ -2.63
TNFRSF4P43489 SNORA27.2-201ENST00000363365 126 ntBASIC-1.37□□□□□ -2.63
TNFRSF4P43489 RNU6-800P-201ENST00000384473 103 ntBASIC-1.37□□□□□ -2.63
TNFRSF4P43489 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.37□□□□□ -2.63
TNFRSF4P43489 AC120024.2-201ENST00000576526 175 ntBASIC-1.37□□□□□ -2.63
TNFRSF4P43489 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.38□□□□□ -2.63
TNFRSF4P43489 RNU6-400P-201ENST00000391173 106 ntBASIC-1.38□□□□□ -2.63
TNFRSF4P43489 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.39□□□□□ -2.63
TNFRSF4P43489 RNU6-940P-201ENST00000363433 104 ntBASIC-1.39□□□□□ -2.63
TNFRSF4P43489 RNU6-828P-201ENST00000364876 107 ntBASIC-1.39□□□□□ -2.63
TNFRSF4P43489 RNU7-119P-201ENST00000459279 63 ntBASIC-1.39□□□□□ -2.63
TNFRSF4P43489 RNU6-79P-201ENST00000362511 107 ntBASIC-1.4□□□□□ -2.63
TNFRSF4P43489 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.41□□□□□ -2.64
TNFRSF4P43489 SNORA40B-201ENST00000385573 128 ntBASIC-1.42□□□□□ -2.64
TNFRSF4P43489 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.43□□□□□ -2.64
TNFRSF4P43489 RNU6-563P-201ENST00000364872 108 ntBASIC-1.43□□□□□ -2.64
TNFRSF4P43489 RNU6-974P-201ENST00000384099 108 ntBASIC-1.43□□□□□ -2.64
TNFRSF4P43489 RNU6-118P-201ENST00000516552 102 ntBASIC-1.43□□□□□ -2.64
TNFRSF4P43489 MIR6502-201ENST00000617296 76 ntBASIC-1.43□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 270.5 ms