Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 MIR4324-201ENST00000584846 72 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 MIR365A-201ENST00000362260 87 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 RNU6-834P-201ENST00000362367 110 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 RNU6-81P-201ENST00000365608 104 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 MIR29B1-201ENST00000385015 81 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 SNORD63.1-201ENST00000516178 80 ntBASIC-1.05□□□□□ -2.58
SCN1AP35498 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.06□□□□□ -2.58
SCN1AP35498 RNU6-479P-201ENST00000516348 105 ntBASIC-1.06□□□□□ -2.58
SCN1AP35498 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.06□□□□□ -2.58
SCN1AP35498 SNORA8.1-201ENST00000384250 140 ntBASIC-1.06□□□□□ -2.58
SCN1AP35498 RNU7-174P-201ENST00000516248 59 ntBASIC-1.06□□□□□ -2.58
SCN1AP35498 SNORD115-33-201ENST00000363723 82 ntBASIC-1.07□□□□□ -2.58
SCN1AP35498 MIR147A-201ENST00000385079 72 ntBASIC-1.07□□□□□ -2.58
SCN1AP35498 MIR1285-2-201ENST00000408311 88 ntBASIC-1.07□□□□□ -2.58
SCN1AP35498 MIR889-201ENST00000401280 79 ntBASIC-1.08□□□□□ -2.58
SCN1AP35498 MIR4668-201ENST00000582284 70 ntBASIC-1.08□□□□□ -2.58
SCN1AP35498 RNU6-267P-201ENST00000516714 103 ntBASIC-1.08□□□□□ -2.58
SCN1AP35498 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.08□□□□□ -2.58
SCN1AP35498 SNORA63.4-201ENST00000362763 126 ntBASIC-1.09□□□□□ -2.58
SCN1AP35498 RNU6-807P-201ENST00000516805 107 ntBASIC-1.09□□□□□ -2.58
SCN1AP35498 MALAT1.1-201ENST00000618249 95 ntBASIC-1.09□□□□□ -2.58
SCN1AP35498 U4.4-201ENST00000620626 117 ntBASIC-1.09□□□□□ -2.58
SCN1AP35498 MIR8485-201ENST00000401372 91 ntBASIC-1.1□□□□□ -2.58
SCN1AP35498 RNU6-982P-201ENST00000516216 102 ntBASIC-1.1□□□□□ -2.58
SCN1AP35498 AP002795.1-201ENST00000534879 84 ntBASIC-1.1□□□□□ -2.58
SCN1AP35498 MIR3115-201ENST00000577915 68 ntBASIC-1.1□□□□□ -2.58
SCN1AP35498 AL606753.1-201ENST00000427435 87 ntBASIC-1.1□□□□□ -2.59
SCN1AP35498 U2.7-201ENST00000619197 100 ntBASIC-1.1□□□□□ -2.59
SCN1AP35498 RNU6-675P-201ENST00000384236 104 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 RNU6-246P-201ENST00000384702 107 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.11□□□□□ -2.59
SCN1AP35498 MTND4LP1-201ENST00000446263 157 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 RNU6-518P-201ENST00000516056 96 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 RNY4P18-201ENST00000391107 89 ntBASIC-1.11□□□□□ -2.59
SCN1AP35498 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.12□□□□□ -2.59
SCN1AP35498 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 SNORD20-201ENST00000384550 80 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 RNU6-919P-201ENST00000516731 104 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 MIR8053-201ENST00000613344 75 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 RNU6-698P-201ENST00000363523 107 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 RNU6-34P-201ENST00000364874 107 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 MIR548Q-201ENST00000408404 100 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 RNY4P30-201ENST00000410216 95 ntBASIC-1.13□□□□□ -2.59
SCN1AP35498 RNU6-979P-201ENST00000383896 107 ntBASIC-1.14□□□□□ -2.59
SCN1AP35498 MIR630-201ENST00000384957 97 ntBASIC-1.14□□□□□ -2.59
SCN1AP35498 AC093729.1-201ENST00000513074 128 ntBASIC-1.14□□□□□ -2.59
SCN1AP35498 RNU6-645P-201ENST00000364649 106 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 AC018880.2-201ENST00000414265 201 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 RNU6-226P-201ENST00000363778 107 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 RNU6-696P-201ENST00000390834 107 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 RNA5SP461-201ENST00000516451 104 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 RNU6-557P-201ENST00000516842 110 ntBASIC-1.15□□□□□ -2.59
SCN1AP35498 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.16□□□□□ -2.59
SCN1AP35498 RNU6-497P-201ENST00000365316 104 ntBASIC-1.16□□□□□ -2.59
SCN1AP35498 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.16□□□□□ -2.59
SCN1AP35498 RNU4-61P-201ENST00000411243 107 ntBASIC-1.16□□□□□ -2.59
SCN1AP35498 SNORD113.1-201ENST00000363280 73 ntBASIC-1.16□□□□□ -2.6
SCN1AP35498 RNU6-478P-201ENST00000363904 110 ntBASIC-1.16□□□□□ -2.6
SCN1AP35498 MIR507-201ENST00000385234 94 ntBASIC-1.16□□□□□ -2.6
SCN1AP35498 AC074348.1-201ENST00000426503 132 ntBASIC-1.16□□□□□ -2.6
SCN1AP35498 MIR429-201ENST00000362106 83 ntBASIC-1.17□□□□□ -2.6
SCN1AP35498 RNU6-458P-201ENST00000384179 107 ntBASIC-1.17□□□□□ -2.6
SCN1AP35498 RNU6-844P-201ENST00000517175 102 ntBASIC-1.17□□□□□ -2.6
SCN1AP35498 U6.58-201ENST00000613107 107 ntBASIC-1.17□□□□□ -2.6
SCN1AP35498 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.17□□□□□ -2.6
SCN1AP35498 RNY1P1-201ENST00000364372 112 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 RNU6-219P-201ENST00000364728 107 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 MIR154-201ENST00000385243 84 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 RNU6-313P-201ENST00000516317 112 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 RNU6-164P-201ENST00000364604 103 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 RNU6-147P-201ENST00000383983 107 ntBASIC-1.18□□□□□ -2.6
SCN1AP35498 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.19□□□□□ -2.6
SCN1AP35498 SNORD45.1-201ENST00000363181 77 ntBASIC-1.19□□□□□ -2.6
SCN1AP35498 RNA5SP215-201ENST00000363440 122 ntBASIC-1.19□□□□□ -2.6
SCN1AP35498 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.19□□□□□ -2.6
SCN1AP35498 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.19□□□□□ -2.6
SCN1AP35498 RNU6-755P-201ENST00000364400 103 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 MIR548BB-201ENST00000626714 66 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-686P-201ENST00000364839 107 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-32P-201ENST00000383948 107 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-13P-201ENST00000384248 107 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-12P-201ENST00000384604 107 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-41P-201ENST00000384741 107 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 SNORD19-201ENST00000391191 68 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 MIR548AG1-201ENST00000579932 66 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 MIR4441-201ENST00000582623 100 ntBASIC-1.2□□□□□ -2.6
SCN1AP35498 RNU6-640P-201ENST00000363693 105 ntBASIC-1.21□□□□□ -2.6
SCN1AP35498 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.21□□□□□ -2.6
SCN1AP35498 SNORD113-1-201ENST00000365321 69 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 MIR1207-201ENST00000408249 87 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.22□□□□□ -2.6
SCN1AP35498 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 451 ms