Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU6-162P-201ENST00000516228 103 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-327P-201ENST00000516270 127 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-971P-201ENST00000516920 106 ntBASIC-1.06□□□□□ -2.58
LMX1AQ8TE12 RNU6-379P-201ENST00000363813 104 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 RNU6-887P-201ENST00000410660 100 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 AL021921.1-201ENST00000442774 93 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 AC138207.3-201ENST00000585289 166 ntBASIC-1.07□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.489-201ENST00000384410 101 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 MIR590-201ENST00000385008 97 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 AL078595.1-201ENST00000404458 226 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 RNU6-388P-201ENST00000517012 105 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 RNU6-389P-201ENST00000517048 105 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 MIR4320-201ENST00000636981 65 ntBASIC-1.08□□□□□ -2.58
LMX1AQ8TE12 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 SCARNA23-201ENST00000516060 130 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 RNU6-346P-201ENST00000516288 111 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 RNU6-109P-201ENST00000516364 107 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 RNU6-184P-201ENST00000516514 107 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 MIR3165-201ENST00000579874 75 ntBASIC-1.09□□□□□ -2.58
LMX1AQ8TE12 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-598P-201ENST00000364017 105 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-645P-201ENST00000364649 106 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-458P-201ENST00000384179 107 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-907P-201ENST00000390924 102 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU7-174P-201ENST00000516248 59 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 U6.58-201ENST00000613107 107 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 U4.4-201ENST00000620626 117 ntBASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.1□□□□□ -2.59
LMX1AQ8TE12 RNU6-704P-201ENST00000364162 103 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-563P-201ENST00000364872 108 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-196P-201ENST00000384315 107 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-258P-201ENST00000390884 101 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-982P-201ENST00000516216 102 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 RNU6-659P-201ENST00000516454 104 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 U7.3-201ENST00000616123 62 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 U2.18-201ENST00000622185 84 ntBASIC-1.11□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-79P-201ENST00000362511 107 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-540P-201ENST00000384622 101 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-972P-201ENST00000391208 107 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-630P-201ENST00000391258 106 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 AL450471.1-201ENST00000447509 127 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU7-200P-201ENST00000516105 62 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 RNU6-752P-201ENST00000516376 102 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.12□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 RNU6-886P-201ENST00000384319 105 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 SNORA19-201ENST00000384737 128 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 MIR548Q-201ENST00000408404 100 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 RNU6-807P-201ENST00000516805 107 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 RNU6-255P-201ENST00000516957 105 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 MIR4490-201ENST00000582647 84 ntBASIC-1.13□□□□□ -2.59
LMX1AQ8TE12 SNORD116-10-201ENST00000363791 102 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 MIR548A3-201ENST00000385297 97 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 SNORA40-201ENST00000388090 126 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 RNU6-587P-201ENST00000391282 106 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 MIR1236-201ENST00000408340 102 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 RNU6-554P-201ENST00000410466 106 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 MIR1468-201ENST00000410600 86 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 MIR4770-201ENST00000579149 58 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.14□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.15□□□□□ -2.59
LMX1AQ8TE12 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.15□□□□□ -2.59
LMX1AQ8TE12 RNU6-604P-201ENST00000390917 100 ntBASIC-1.15□□□□□ -2.59
LMX1AQ8TE12 SNORD77.2-201ENST00000391045 68 ntBASIC-1.15□□□□□ -2.59
LMX1AQ8TE12 RNU6-463P-201ENST00000384340 107 ntBASIC-1.16□□□□□ -2.6
LMX1AQ8TE12 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.16□□□□□ -2.6
LMX1AQ8TE12 MIR548C-201ENST00000384815 97 ntBASIC-1.16□□□□□ -2.6
LMX1AQ8TE12 RNU6-696P-201ENST00000390834 107 ntBASIC-1.16□□□□□ -2.6
LMX1AQ8TE12 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.17□□□□□ -2.6
LMX1AQ8TE12 RNU6-497P-201ENST00000365316 104 ntBASIC-1.17□□□□□ -2.6
LMX1AQ8TE12 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.18□□□□□ -2.6
LMX1AQ8TE12 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.18□□□□□ -2.6
LMX1AQ8TE12 RNU6-106P-201ENST00000384405 107 ntBASIC-1.18□□□□□ -2.6
LMX1AQ8TE12 MT-TG-201ENST00000387429 68 ntBASIC-1.18□□□□□ -2.6
LMX1AQ8TE12 RNU6-228P-201ENST00000362700 106 ntBASIC-1.19□□□□□ -2.6
LMX1AQ8TE12 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.19□□□□□ -2.6
LMX1AQ8TE12 SNORD116-21-201ENST00000384507 92 ntBASIC-1.19□□□□□ -2.6
LMX1AQ8TE12 RNU6-880P-201ENST00000384526 107 ntBASIC-1.19□□□□□ -2.6
LMX1AQ8TE12 MIR548H1-201ENST00000408610 102 ntBASIC-1.19□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms