Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MIR548A3-201ENST00000385297 97 ntBASIC-0.92□□□□□ -2.56
CPSF4O95639 MIR548I1-201ENST00000408810 149 ntBASIC-0.92□□□□□ -2.56
CPSF4O95639 snoU13.17-201ENST00000458802 104 ntBASIC-0.92□□□□□ -2.56
CPSF4O95639 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.92□□□□□ -2.56
CPSF4O95639 MIR4306-201ENST00000583390 91 ntBASIC-0.92□□□□□ -2.56
CPSF4O95639 RNA5SP331-201ENST00000364986 107 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 MIR147A-201ENST00000385079 72 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 SNORD64-201ENST00000386683 67 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.93□□□□□ -2.56
CPSF4O95639 RNA5SP147-201ENST00000516493 109 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 MIR4464-201ENST00000580818 92 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 AL353803.5-201ENST00000599815 141 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 MIR4773-1-201ENST00000637203 78 ntBASIC-0.93□□□□□ -2.56
CPSF4O95639 RNU6-824P-201ENST00000363724 104 ntBASIC-0.94□□□□□ -2.56
CPSF4O95639 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.94□□□□□ -2.56
CPSF4O95639 RNU6-346P-201ENST00000516288 111 ntBASIC-0.94□□□□□ -2.56
CPSF4O95639 U6.95-201ENST00000636931 70 ntBASIC-0.94□□□□□ -2.56
CPSF4O95639 SNORD114-17-201ENST00000364699 75 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 SNORA33.1-201ENST00000364957 130 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 SNORD58A-201ENST00000383875 65 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 MIR203A-201ENST00000384836 110 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 MIR601-201ENST00000385256 79 ntBASIC-0.95□□□□□ -2.56
CPSF4O95639 RNU5F-1-201ENST00000362507 117 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 RNU6-80P-201ENST00000384195 107 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 RNU6-972P-201ENST00000391208 107 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 MIR6509-201ENST00000614603 85 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 AL627230.5-201ENST00000619807 58 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.96□□□□□ -2.56
CPSF4O95639 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 SNORA19.1-201ENST00000410656 129 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.97□□□□□ -2.56
CPSF4O95639 SCARNA23-201ENST00000516060 130 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 RNU6-659P-201ENST00000516454 104 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 RNU6-255P-201ENST00000516957 105 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 RNU6-706P-201ENST00000517229 104 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 AC026421.1-201ENST00000519101 163 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 AC140658.3-201ENST00000567603 271 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 MIR3657-201ENST00000584818 117 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 AL445584.3-201ENST00000617173 78 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 MIR6888-201ENST00000621977 67 ntBASIC-0.97□□□□□ -2.56
CPSF4O95639 SNORA2.1-201ENST00000363089 137 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 MIR1255B2-201ENST00000408618 67 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 RNU6-887P-201ENST00000410660 100 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 SCARNA18B-201ENST00000458806 135 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 RNU6-904P-201ENST00000516206 101 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 MIR382-201ENST00000637119 76 ntBASIC-0.98□□□□□ -2.57
CPSF4O95639 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 RNY1P5-201ENST00000383890 115 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 AL691482.2-201ENST00000457453 84 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 RNA5SP180-201ENST00000516181 101 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 MIR198-201ENST00000637333 62 ntBASIC-0.99□□□□□ -2.57
CPSF4O95639 RNU6-1107P-201ENST00000364817 104 ntBASIC-1□□□□□ -2.57
CPSF4O95639 RNU6-1157P-201ENST00000384456 106 ntBASIC-1□□□□□ -2.57
CPSF4O95639 RNU6-880P-201ENST00000384526 107 ntBASIC-1□□□□□ -2.57
CPSF4O95639 Y_RNA.558-201ENST00000384685 113 ntBASIC-1□□□□□ -2.57
CPSF4O95639 MIR1285-2-201ENST00000408311 88 ntBASIC-1□□□□□ -2.57
CPSF4O95639 MIR1468-201ENST00000410600 86 ntBASIC-1□□□□□ -2.57
CPSF4O95639 RNU6-158P-201ENST00000517104 100 ntBASIC-1□□□□□ -2.57
CPSF4O95639 CYP3A54P-201ENST00000566950 75 ntBASIC-1□□□□□ -2.57
CPSF4O95639 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 RNU6-412P-201ENST00000516434 106 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 snoU83B.1-201ENST00000517136 88 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 MIR4796-201ENST00000580742 81 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 U6.81-201ENST00000612550 106 ntBASIC-1.01□□□□□ -2.57
CPSF4O95639 SNORD116-10-201ENST00000363791 102 ntBASIC-1.02□□□□□ -2.57
CPSF4O95639 RNU6-907P-201ENST00000390924 102 ntBASIC-1.02□□□□□ -2.57
CPSF4O95639 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.02□□□□□ -2.57
CPSF4O95639 MIR365A-201ENST00000362260 87 ntBASIC-1.03□□□□□ -2.57
CPSF4O95639 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.03□□□□□ -2.57
CPSF4O95639 SNORD116-21-201ENST00000384507 92 ntBASIC-1.03□□□□□ -2.57
CPSF4O95639 HLA-S-202ENST00000425174 53 ntBASIC-1.04□□□□□ -2.58
CPSF4O95639 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.04□□□□□ -2.58
CPSF4O95639 RNU6-924P-201ENST00000362926 108 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 MIR521-2-201ENST00000384818 87 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 MIR1236-201ENST00000408340 102 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 RNU7-61P-201ENST00000515897 61 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 MIR4441-201ENST00000582623 100 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 MIR1246-201ENST00000636535 73 ntBASIC-1.05□□□□□ -2.58
CPSF4O95639 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.05□□□□□ -2.58
CPSF4O95639 MIR590-201ENST00000385008 97 ntBASIC-1.06□□□□□ -2.58
CPSF4O95639 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.06□□□□□ -2.58
CPSF4O95639 RNU6-537P-201ENST00000517277 103 ntBASIC-1.06□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 223.1 ms