Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORD89-201ENST00000390981 114 ntBASIC1.34□□□□□ -2.19
CCDC39Q9UFE4 RNU6-269P-201ENST00000391077 97 ntBASIC1.33□□□□□ -2.2
CCDC39Q9UFE4 AL603825.1-201ENST00000438481 80 ntBASIC1.33□□□□□ -2.2
CCDC39Q9UFE4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.33□□□□□ -2.2
CCDC39Q9UFE4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC39Q9UFE4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC39Q9UFE4 RNU6-1184P-201ENST00000384588 108 ntBASIC1.32□□□□□ -2.2
CCDC39Q9UFE4 SNORD105-201ENST00000386910 85 ntBASIC1.32□□□□□ -2.2
CCDC39Q9UFE4 RNA5SP404-201ENST00000517118 132 ntBASIC1.32□□□□□ -2.2
CCDC39Q9UFE4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC39Q9UFE4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 SNORA8.2-201ENST00000384372 139 ntBASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 RNA5SP484-201ENST00000458857 111 ntBASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 MIR3678-201ENST00000578455 94 ntBASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC39Q9UFE4 RNU7-174P-201ENST00000516248 59 ntBASIC1.3□□□□□ -2.2
CCDC39Q9UFE4 U2.7-201ENST00000619197 100 ntBASIC1.3□□□□□ -2.2
CCDC39Q9UFE4 RNU6-698P-201ENST00000363523 107 ntBASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 RNU6-34P-201ENST00000364874 107 ntBASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 MIR517B-201ENST00000385102 67 ntBASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 AC021146.9-201ENST00000512503 156 ntBASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
CCDC39Q9UFE4 SNORD113-2-201ENST00000391082 72 ntBASIC1.28□□□□□ -2.2
CCDC39Q9UFE4 Y_RNA.633-201ENST00000459107 95 ntBASIC1.28□□□□□ -2.2
CCDC39Q9UFE4 U7.7-201ENST00000459276 60 ntBASIC1.28□□□□□ -2.2
CCDC39Q9UFE4 SCARNA16.5-201ENST00000517114 183 ntBASIC1.28□□□□□ -2.2
CCDC39Q9UFE4 U4.4-201ENST00000620626 117 ntBASIC1.28□□□□□ -2.2
CCDC39Q9UFE4 RNU6-1312P-201ENST00000362425 108 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 FABP5P4-201ENST00000437203 171 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 OR2A41P-201ENST00000473586 105 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 MIR3612-201ENST00000579753 87 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 MIR6078-201ENST00000611069 100 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 AL162376.1-201ENST00000624117 175 ntBASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
CCDC39Q9UFE4 RNU1-124P-201ENST00000363861 145 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 SNORA33.1-201ENST00000364957 130 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 SNORA15B-2-201ENST00000384058 135 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 SNORA15B-1-201ENST00000384334 135 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 MIR573-201ENST00000384964 99 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 AC103810.9-201ENST00000606688 112 ntBASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CCDC39Q9UFE4 Y_RNA.125-201ENST00000363371 111 ntBASIC1.25□□□□□ -2.21
CCDC39Q9UFE4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.25□□□□□ -2.21
CCDC39Q9UFE4 MIR652-201ENST00000385278 98 ntBASIC1.24□□□□□ -2.21
CCDC39Q9UFE4 SCARNA17.3-201ENST00000516381 125 ntBASIC1.24□□□□□ -2.21
CCDC39Q9UFE4 uc_338.10-201ENST00000621872 182 ntBASIC1.24□□□□□ -2.21
CCDC39Q9UFE4 MIR6828-201ENST00000636181 60 ntBASIC1.24□□□□□ -2.21
CCDC39Q9UFE4 SNORA63.6-201ENST00000364921 119 ntBASIC1.23□□□□□ -2.21
CCDC39Q9UFE4 Y_RNA.407-201ENST00000383986 113 ntBASIC1.23□□□□□ -2.21
CCDC39Q9UFE4 MIR19B1-201ENST00000384829 87 ntBASIC1.23□□□□□ -2.21
CCDC39Q9UFE4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC39Q9UFE4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.22□□□□□ -2.21
CCDC39Q9UFE4 MIR548AE1-201ENST00000583292 70 ntBASIC1.22□□□□□ -2.21
CCDC39Q9UFE4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC39Q9UFE4 MIR4295-201ENST00000585286 85 ntBASIC1.22□□□□□ -2.21
CCDC39Q9UFE4 MIR582-201ENST00000365731 98 ntBASIC1.21□□□□□ -2.22
CCDC39Q9UFE4 RNU6-520P-201ENST00000384717 104 ntBASIC1.21□□□□□ -2.22
CCDC39Q9UFE4 MIR548E-201ENST00000408287 88 ntBASIC1.21□□□□□ -2.22
CCDC39Q9UFE4 RNU6-1053P-201ENST00000515930 101 ntBASIC1.21□□□□□ -2.22
CCDC39Q9UFE4 MIR548AD-201ENST00000584780 82 ntBASIC1.21□□□□□ -2.22
CCDC39Q9UFE4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 SNORA41B-201ENST00000384785 128 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 SNORD124-201ENST00000459577 104 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 AC087343.1-201ENST00000477341 475 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 RNA5SP227-201ENST00000516184 113 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 MIR4498-201ENST00000577599 66 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 MIR4473-201ENST00000583731 91 ntBASIC1.2□□□□□ -2.22
CCDC39Q9UFE4 Y_RNA.246-201ENST00000364495 108 ntBASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 Y_RNA.325-201ENST00000365171 122 ntBASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 MIR200A-201ENST00000384875 90 ntBASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 RNU4-88P-201ENST00000411220 86 ntBASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 snoU13.31-201ENST00000607291 104 ntBASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC39Q9UFE4 SNORA36.1-201ENST00000363424 132 ntBASIC1.18□□□□□ -2.22
CCDC39Q9UFE4 AC006210.1-201ENST00000424882 111 ntBASIC1.18□□□□□ -2.22
CCDC39Q9UFE4 SNORD114-21-201ENST00000606412 72 ntBASIC1.18□□□□□ -2.22
CCDC39Q9UFE4 SNORD114-24-201ENST00000365029 72 ntBASIC1.17□□□□□ -2.22
CCDC39Q9UFE4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.17□□□□□ -2.22
CCDC39Q9UFE4 Y_RNA.379-201ENST00000365653 102 ntBASIC1.17□□□□□ -2.22
CCDC39Q9UFE4 SNORD110-201ENST00000408189 75 ntBASIC1.17□□□□□ -2.22
CCDC39Q9UFE4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC39Q9UFE4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC39Q9UFE4 MIR18A-201ENST00000362310 71 ntBASIC1.16□□□□□ -2.22
CCDC39Q9UFE4 RNU6-1246P-201ENST00000391064 107 ntBASIC1.16□□□□□ -2.22
CCDC39Q9UFE4 RNA5SP268-201ENST00000516828 124 ntBASIC1.16□□□□□ -2.22
CCDC39Q9UFE4 AC025627.3-201ENST00000582078 182 ntBASIC1.16□□□□□ -2.22
CCDC39Q9UFE4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.15□□□□□ -2.23
CCDC39Q9UFE4 SNORA9.1-201ENST00000362412 131 ntBASIC1.15□□□□□ -2.23
CCDC39Q9UFE4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.15□□□□□ -2.23
CCDC39Q9UFE4 CYP3A54P-201ENST00000566950 75 ntBASIC1.15□□□□□ -2.23
CCDC39Q9UFE4 RNU7-119P-201ENST00000459279 63 ntBASIC1.14□□□□□ -2.23
CCDC39Q9UFE4 MIR4661-201ENST00000582720 75 ntBASIC1.14□□□□□ -2.23
CCDC39Q9UFE4 MIR516B1-201ENST00000385211 90 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 TRMT112P2-201ENST00000512910 132 ntBASIC1.13□□□□□ -2.23
CCDC39Q9UFE4 RNU6-231P-201ENST00000517122 103 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms