Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIRLET7A1-201ENST00000362295 80 ntBASIC0.77□□□□□ -2.29
NKX2-4Q9H2Z4 RPL39P28-201ENST00000465655 155 ntBASIC0.77□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-351P-201ENST00000516097 100 ntBASIC0.77□□□□□ -2.29
NKX2-4Q9H2Z4 Y_RNA.12-201ENST00000362393 112 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 SNORD118-201ENST00000363593 134 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 MT-TY-201ENST00000387409 66 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-1275P-201ENST00000391087 107 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 RNU2-59P-201ENST00000410482 191 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 AC098934.3-201ENST00000430450 190 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 NAMPTP3-201ENST00000569273 224 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 MIR4653-201ENST00000585107 83 ntBASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-1094P-201ENST00000362416 104 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 Y_RNA.94-201ENST00000363068 106 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 Y_RNA.371-201ENST00000365591 113 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6V-201ENST00000384105 107 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 MIR518A1-201ENST00000385068 85 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-279P-201ENST00000391297 101 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 AC006210.1-201ENST00000424882 111 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 YWHAEP2-201ENST00000580066 112 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 YWHAEP3-201ENST00000582767 121 ntBASIC0.75□□□□□ -2.29
NKX2-4Q9H2Z4 AC069271.1-201ENST00000445577 156 ntBASIC0.74□□□□□ -2.29
NKX2-4Q9H2Z4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.74□□□□□ -2.29
NKX2-4Q9H2Z4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.74□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-681P-201ENST00000364012 104 ntBASIC0.73□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-857P-201ENST00000515893 110 ntBASIC0.73□□□□□ -2.29
NKX2-4Q9H2Z4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.73□□□□□ -2.29
NKX2-4Q9H2Z4 MIR4752-201ENST00000579672 72 ntBASIC0.73□□□□□ -2.29
NKX2-4Q9H2Z4 AC069503.3-201ENST00000618674 145 ntBASIC0.73□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-945P-201ENST00000383947 107 ntBASIC0.72□□□□□ -2.29
NKX2-4Q9H2Z4 SNORD110-201ENST00000408189 75 ntBASIC0.72□□□□□ -2.29
NKX2-4Q9H2Z4 RNU6-824P-201ENST00000363724 104 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-340P-201ENST00000364005 107 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-54P-201ENST00000365563 107 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-24P-201ENST00000384440 107 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 HAR1A.1-201ENST00000459583 118 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-229P-201ENST00000516614 102 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-807P-201ENST00000516805 107 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-303P-201ENST00000517091 106 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 AC018659.1-201ENST00000551083 169 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 U6.81-201ENST00000612550 106 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 MIR2909-201ENST00000617113 69 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 MIR4773-1-201ENST00000637203 78 ntBASIC0.71□□□□□ -2.3
NKX2-4Q9H2Z4 RNA5SP499-201ENST00000363982 119 ntBASIC0.7□□□□□ -2.3
NKX2-4Q9H2Z4 Y_RNA.606-201ENST00000410579 103 ntBASIC0.7□□□□□ -2.3
NKX2-4Q9H2Z4 RNU4-54P-201ENST00000516428 129 ntBASIC0.7□□□□□ -2.3
NKX2-4Q9H2Z4 MIR146A-201ENST00000385201 99 ntBASIC0.69□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-274P-201ENST00000459566 107 ntBASIC0.69□□□□□ -2.3
NKX2-4Q9H2Z4 RNU5B-6P-201ENST00000516765 68 ntBASIC0.69□□□□□ -2.3
NKX2-4Q9H2Z4 SNORA70.25-201ENST00000612741 95 ntBASIC0.69□□□□□ -2.3
NKX2-4Q9H2Z4 MIR1297-201ENST00000637311 77 ntBASIC0.69□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-382P-201ENST00000365181 106 ntBASIC0.68□□□□□ -2.3
NKX2-4Q9H2Z4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.68□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-35P-201ENST00000384530 107 ntBASIC0.68□□□□□ -2.3
NKX2-4Q9H2Z4 SNORD75.2-201ENST00000408784 58 ntBASIC0.68□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6-495P-201ENST00000362995 107 ntBASIC0.67□□□□□ -2.3
NKX2-4Q9H2Z4 MIR5706-201ENST00000579841 80 ntBASIC0.67□□□□□ -2.3
NKX2-4Q9H2Z4 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.67□□□□□ -2.3
NKX2-4Q9H2Z4 MIR5087-201ENST00000635826 76 ntBASIC0.67□□□□□ -2.3
NKX2-4Q9H2Z4 SNORA2A-201ENST00000383885 135 ntBASIC0.66□□□□□ -2.3
NKX2-4Q9H2Z4 RNU7-24P-201ENST00000458867 62 ntBASIC0.66□□□□□ -2.3
NKX2-4Q9H2Z4 MIR4484-201ENST00000582855 83 ntBASIC0.66□□□□□ -2.3
NKX2-4Q9H2Z4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
NKX2-4Q9H2Z4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-638P-201ENST00000516582 104 ntBASIC0.65□□□□□ -2.31
NKX2-4Q9H2Z4 MIR4473-201ENST00000583731 91 ntBASIC0.65□□□□□ -2.31
NKX2-4Q9H2Z4 RNU1-29P-201ENST00000606574 126 ntBASIC0.64□□□□□ -2.31
NKX2-4Q9H2Z4 U7.6-201ENST00000610841 64 ntBASIC0.64□□□□□ -2.31
NKX2-4Q9H2Z4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
NKX2-4Q9H2Z4 SNORD114-4-201ENST00000363962 75 ntBASIC0.63□□□□□ -2.31
NKX2-4Q9H2Z4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.63□□□□□ -2.31
NKX2-4Q9H2Z4 Y_RNA.532-201ENST00000384590 113 ntBASIC0.63□□□□□ -2.31
NKX2-4Q9H2Z4 AC074348.1-201ENST00000426503 132 ntBASIC0.63□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-863P-201ENST00000515989 104 ntBASIC0.63□□□□□ -2.31
NKX2-4Q9H2Z4 Y_RNA.244-201ENST00000364484 109 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 AL691482.2-201ENST00000457453 84 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-848P-201ENST00000515948 107 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-617P-201ENST00000516147 107 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-473P-201ENST00000516164 107 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-154P-201ENST00000384306 106 ntBASIC0.61□□□□□ -2.31
NKX2-4Q9H2Z4 SNORD42B-201ENST00000458893 67 ntBASIC0.61□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-752P-201ENST00000516376 102 ntBASIC0.61□□□□□ -2.31
NKX2-4Q9H2Z4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.61□□□□□ -2.31
NKX2-4Q9H2Z4 SNORD44.1-201ENST00000363202 61 ntBASIC0.6□□□□□ -2.31
NKX2-4Q9H2Z4 AC243829.6-201ENST00000612652 106 ntBASIC0.6□□□□□ -2.31
NKX2-4Q9H2Z4 U7.4-201ENST00000614961 63 ntBASIC0.6□□□□□ -2.31
NKX2-4Q9H2Z4 MIR6755-201ENST00000619993 66 ntBASIC0.6□□□□□ -2.31
NKX2-4Q9H2Z4 HMGN2P22-201ENST00000427588 175 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 SCARNA18B-201ENST00000458806 135 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 SNORA68.3-201ENST00000515906 83 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 MIR4514-201ENST00000581410 57 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 AC145423.2-201ENST00000610631 239 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 uc_338.10-201ENST00000621872 182 ntBASIC0.59□□□□□ -2.31
NKX2-4Q9H2Z4 RNU6-1039P-201ENST00000383931 107 ntBASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 SNORA8.1-201ENST00000384250 140 ntBASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 MIR760-201ENST00000390220 80 ntBASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.58□□□□□ -2.32
NKX2-4Q9H2Z4 MIR6509-201ENST00000614603 85 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms