Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RNU6-1049P-201ENST00000516414 107 ntBASIC0.41□□□□□ -2.34
PKP4Q99569 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
PKP4Q99569 SNORA70.25-201ENST00000612741 95 ntBASIC0.41□□□□□ -2.34
PKP4Q99569 MIR1245B-201ENST00000636115 69 ntBASIC0.41□□□□□ -2.34
PKP4Q99569 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.41□□□□□ -2.34
PKP4Q99569 AC090625.1-201ENST00000357130 210 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 RNU6-315P-201ENST00000362666 107 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 RNU6-478P-201ENST00000363904 110 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 RNU6-686P-201ENST00000364839 107 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 SNORA2A-201ENST00000383885 135 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 RNU6V-201ENST00000384105 107 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 SNORD78.1-201ENST00000390866 65 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 YWHAEP2-201ENST00000580066 112 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 RNU1-29P-201ENST00000606574 126 ntBASIC0.4□□□□□ -2.35
PKP4Q99569 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.4□□□□□ -2.35
PKP4Q99569 SNORD44.1-201ENST00000363202 61 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 Y_RNA.313-201ENST00000365095 103 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 Y_RNA.423-201ENST00000384057 113 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 RNU6-1124P-201ENST00000384169 107 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 RNU6-380P-201ENST00000410207 107 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 YWHAEP3-201ENST00000582767 121 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 U7.6-201ENST00000610841 64 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 MIR6779-201ENST00000617283 64 ntBASIC0.39□□□□□ -2.35
PKP4Q99569 MIRLET7A1-201ENST00000362295 80 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 RNU6-54P-201ENST00000365563 107 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.38□□□□□ -2.35
PKP4Q99569 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 RNU5B-6P-201ENST00000516765 68 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 MIR1273G-201ENST00000577677 100 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 MIR4712-201ENST00000583750 82 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 MIR6755-201ENST00000619993 66 ntBASIC0.38□□□□□ -2.35
PKP4Q99569 Y_RNA.12-201ENST00000362393 112 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 RNU6-228P-201ENST00000362700 106 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 RNU6-495P-201ENST00000362995 107 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 RNU6-824P-201ENST00000363724 104 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 SNORD75.2-201ENST00000408784 58 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 Y_RNA.606-201ENST00000410579 103 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 RNU7-24P-201ENST00000458867 62 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.37□□□□□ -2.35
PKP4Q99569 U6.81-201ENST00000612550 106 ntBASIC0.37□□□□□ -2.35
PKP4Q99569 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.36□□□□□ -2.35
PKP4Q99569 MIRLET7D-201ENST00000362263 87 ntBASIC0.36□□□□□ -2.35
PKP4Q99569 RNU6-681P-201ENST00000364012 104 ntBASIC0.36□□□□□ -2.35
PKP4Q99569 Y_RNA.371-201ENST00000365591 113 ntBASIC0.36□□□□□ -2.35
PKP4Q99569 Y_RNA.94-201ENST00000363068 106 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 SNORD114-4-201ENST00000363962 75 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 RNU6-340P-201ENST00000364005 107 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 Y_RNA.205-201ENST00000364128 113 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 Y_RNA.258-201ENST00000364613 105 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 Y_RNA.407-201ENST00000383986 113 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 MIR760-201ENST00000390220 80 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 MIR1255A-201ENST00000408338 113 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 MIR4473-201ENST00000583731 91 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 MIR4773-1-201ENST00000637203 78 ntBASIC0.35□□□□□ -2.35
PKP4Q99569 RNU6-1094P-201ENST00000362416 104 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 Y_RNA.125-201ENST00000363371 111 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 RNU6-382P-201ENST00000365181 106 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 HMGN2P22-201ENST00000427588 175 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 Y_RNA.685-201ENST00000516532 108 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 RNU6-303P-201ENST00000517091 106 ntBASIC0.34□□□□□ -2.36
PKP4Q99569 MIR103A1-201ENST00000362165 78 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 RNU6-1327P-201ENST00000365302 105 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 SNORD42B-201ENST00000458893 67 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 RNU6-274P-201ENST00000459566 107 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 RNU6-1232P-201ENST00000516299 86 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 RNU6-807P-201ENST00000516805 107 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 uc_338.10-201ENST00000621872 182 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 MIR1297-201ENST00000637311 77 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 MIR924-201ENST00000638017 53 ntBASIC0.33□□□□□ -2.36
PKP4Q99569 RNA5SP128-201ENST00000365305 116 ntBASIC0.32□□□□□ -2.36
PKP4Q99569 RNU6-279P-201ENST00000391297 101 ntBASIC0.32□□□□□ -2.36
PKP4Q99569 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
PKP4Q99569 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.32□□□□□ -2.36
PKP4Q99569 MIR501-201ENST00000390204 84 ntBASIC0.31□□□□□ -2.36
PKP4Q99569 AC074348.1-201ENST00000426503 132 ntBASIC0.31□□□□□ -2.36
PKP4Q99569 RNU6-752P-201ENST00000516376 102 ntBASIC0.31□□□□□ -2.36
PKP4Q99569 MIR548AE1-201ENST00000583292 70 ntBASIC0.31□□□□□ -2.36
PKP4Q99569 MIR548AD-201ENST00000584780 82 ntBASIC0.31□□□□□ -2.36
PKP4Q99569 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
PKP4Q99569 SNORA9.1-201ENST00000362412 131 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 Y_RNA.532-201ENST00000384590 113 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 RNU6-857P-201ENST00000515893 110 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 RNU7-129P-201ENST00000516128 62 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 RNA5SP395-201ENST00000516567 118 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 MIR4677-201ENST00000584153 80 ntBASIC0.3□□□□□ -2.36
PKP4Q99569 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
PKP4Q99569 RNA5SP62-201ENST00000363457 110 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 RNU6-154P-201ENST00000384306 106 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 RNU6-24P-201ENST00000384440 107 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 MIR652-201ENST00000385278 98 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 RNU6-1275P-201ENST00000391087 107 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 AC073261.1-201ENST00000429409 121 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 AL691482.2-201ENST00000457453 84 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 SCARNA17.3-201ENST00000516381 125 ntBASIC0.29□□□□□ -2.36
PKP4Q99569 MIR330-201ENST00000362196 94 ntBASIC0.28□□□□□ -2.36
PKP4Q99569 RNU6-1039P-201ENST00000383931 107 ntBASIC0.28□□□□□ -2.36
PKP4Q99569 RNU6-815P-201ENST00000384080 113 ntBASIC0.28□□□□□ -2.36
PKP4Q99569 RNA5SP225-201ENST00000410874 135 ntBASIC0.28□□□□□ -2.36
PKP4Q99569 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 210.6 ms