Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNA5SP193-201ENST00000410353 107 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNA5SP225-201ENST00000410874 135 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 AC074348.1-201ENST00000426503 132 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNU6-303P-201ENST00000517091 106 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 MIR4711-201ENST00000578274 70 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 MIR5706-201ENST00000579841 80 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNU1-29P-201ENST00000606574 126 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 SNORA25.18-201ENST00000607153 114 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 SNORD71-201ENST00000411292 86 ntBASIC0.53□□□□□ -2.32
HOXD9P28356 AC069271.1-201ENST00000445577 156 ntBASIC0.53□□□□□ -2.32
HOXD9P28356 MIR1297-201ENST00000637311 77 ntBASIC0.53□□□□□ -2.32
HOXD9P28356 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.33
HOXD9P28356 RNU6-681P-201ENST00000364012 104 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 Y_RNA.258-201ENST00000364613 105 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 RNU6V-201ENST00000384105 107 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 SNORD75.2-201ENST00000408784 58 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 RNU6-229P-201ENST00000516614 102 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 NAMPTP3-201ENST00000569273 224 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 AC243829.3-201ENST00000622177 108 ntBASIC0.52□□□□□ -2.33
HOXD9P28356 Y_RNA.371-201ENST00000365591 113 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 Y_RNA.532-201ENST00000384590 113 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 SNORD110-201ENST00000408189 75 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 RNU6-863P-201ENST00000515989 104 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 RNU6-638P-201ENST00000516582 104 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.51□□□□□ -2.33
HOXD9P28356 RNU6-382P-201ENST00000365181 106 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 RNU6-54P-201ENST00000365563 107 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 MIR216A-201ENST00000385063 110 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 AC006210.1-201ENST00000424882 111 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 RNU6-807P-201ENST00000516805 107 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 RNA5SP480-201ENST00000516840 109 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 MIR4752-201ENST00000579672 72 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 SNORA70.25-201ENST00000612741 95 ntBASIC0.5□□□□□ -2.33
HOXD9P28356 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
HOXD9P28356 RN7SL793P-201ENST00000583259 296 ntBASIC0.49□□□□□ -2.33
HOXD9P28356 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
HOXD9P28356 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
HOXD9P28356 Y_RNA.36-201ENST00000362602 112 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 SNORD44.1-201ENST00000363202 61 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 SNORD42B-201ENST00000458893 67 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 RNU6-752P-201ENST00000516376 102 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 RNU5B-6P-201ENST00000516765 68 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 MIR6755-201ENST00000619993 66 ntBASIC0.48□□□□□ -2.33
HOXD9P28356 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.47□□□□□ -2.33
HOXD9P28356 SNORA2A-201ENST00000383885 135 ntBASIC0.47□□□□□ -2.33
HOXD9P28356 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
HOXD9P28356 RNU6-274P-201ENST00000459566 107 ntBASIC0.47□□□□□ -2.33
HOXD9P28356 SNORD114-26-201ENST00000363543 72 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 SNORD114-4-201ENST00000363962 75 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 Y_RNA.244-201ENST00000364484 109 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 RNU6-154P-201ENST00000384306 106 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 HMGN2P22-201ENST00000427588 175 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 U7.6-201ENST00000610841 64 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 uc_338.17-201ENST00000619633 179 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 MIR4773-1-201ENST00000637203 78 ntBASIC0.46□□□□□ -2.34
HOXD9P28356 Y_RNA.407-201ENST00000383986 113 ntBASIC0.45□□□□□ -2.34
HOXD9P28356 AC145423.2-201ENST00000610631 239 ntBASIC0.45□□□□□ -2.34
HOXD9P28356 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.45□□□□□ -2.34
HOXD9P28356 U7.4-201ENST00000614961 63 ntBASIC0.45□□□□□ -2.34
HOXD9P28356 Y_RNA.125-201ENST00000363371 111 ntBASIC0.44□□□□□ -2.34
HOXD9P28356 RNU6-1039P-201ENST00000383931 107 ntBASIC0.44□□□□□ -2.34
HOXD9P28356 Y_RNA.423-201ENST00000384057 113 ntBASIC0.44□□□□□ -2.34
HOXD9P28356 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
HOXD9P28356 SCARNA18B-201ENST00000458806 135 ntBASIC0.44□□□□□ -2.34
HOXD9P28356 MIR5087-201ENST00000635826 76 ntBASIC0.44□□□□□ -2.34
HOXD9P28356 SNORD114-23-201ENST00000363536 72 ntBASIC0.43□□□□□ -2.34
HOXD9P28356 AC243829.6-201ENST00000612652 106 ntBASIC0.43□□□□□ -2.34
HOXD9P28356 MIR4662A-201ENST00000637499 67 ntBASIC0.43□□□□□ -2.34
HOXD9P28356 MIRLET7D-201ENST00000362263 87 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 RNU6-330P-201ENST00000363015 107 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 AL691482.2-201ENST00000457453 84 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 SNORA68.3-201ENST00000515906 83 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 RNU6-1232P-201ENST00000516299 86 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 MIR4484-201ENST00000582855 83 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 MIR3675-201ENST00000583661 73 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 uc_338.10-201ENST00000621872 182 ntBASIC0.42□□□□□ -2.34
HOXD9P28356 MIR548AE1-201ENST00000583292 70 ntBASIC0.41□□□□□ -2.34
HOXD9P28356 MIR4473-201ENST00000583731 91 ntBASIC0.41□□□□□ -2.34
HOXD9P28356 MIR548AD-201ENST00000584780 82 ntBASIC0.41□□□□□ -2.34
HOXD9P28356 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.41□□□□□ -2.34
HOXD9P28356 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
HOXD9P28356 RNA5SP128-201ENST00000365305 116 ntBASIC0.4□□□□□ -2.35
HOXD9P28356 RNU6-260P-201ENST00000384092 107 ntBASIC0.4□□□□□ -2.35
HOXD9P28356 MIR652-201ENST00000385278 98 ntBASIC0.4□□□□□ -2.35
HOXD9P28356 SCARNA17.3-201ENST00000516381 125 ntBASIC0.4□□□□□ -2.35
HOXD9P28356 Y_RNA.788-201ENST00000622394 112 ntBASIC0.4□□□□□ -2.35
HOXD9P28356 RNU6-776P-201ENST00000364403 104 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 RNU6-1022P-201ENST00000365049 104 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 SNORA8.1-201ENST00000384250 140 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 MIR501-201ENST00000390204 84 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 MIR760-201ENST00000390220 80 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 MIR889-201ENST00000401280 79 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 Y_RNA.681-201ENST00000516445 113 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 MIR4677-201ENST00000584153 80 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 MIR6509-201ENST00000614603 85 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 AC010487.4-201ENST00000637027 61 ntBASIC0.39□□□□□ -2.35
HOXD9P28356 AC090625.1-201ENST00000357130 210 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms