Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.325-201ENST00000365171 122 ntBASIC-4.07□□□□□ -3.06
CCDC88BA6NC98 RNU6-643P-201ENST00000384018 107 ntBASIC-4.07□□□□□ -3.06
CCDC88BA6NC98 MTND4LP30-201ENST00000454092 297 ntBASIC-4.07□□□□□ -3.06
CCDC88BA6NC98 RNU5F-1-201ENST00000362507 117 ntBASIC-4.08□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.41-201ENST00000362646 102 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 MIR581-201ENST00000384895 96 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.612-201ENST00000410717 95 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 RNY3P8-201ENST00000411366 126 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 SNORD4B-201ENST00000459083 72 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 RNU6-1046P-201ENST00000516538 107 ntBASIC-4.09□□□□□ -3.06
CCDC88BA6NC98 Y_RNA.31-201ENST00000362574 102 ntBASIC-4.1□□□□□ -3.07
CCDC88BA6NC98 SNORA26.8-201ENST00000391306 124 ntBASIC-4.1□□□□□ -3.07
CCDC88BA6NC98 RNU6-908P-201ENST00000410160 94 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 RNU6-232P-201ENST00000517144 64 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 AC037487.3-201ENST00000606668 112 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 RNU6-508P-201ENST00000363231 103 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 SNORD60-201ENST00000383903 83 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 Y_RNA.395-201ENST00000383945 109 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 RNU6-373P-201ENST00000411247 98 ntBASIC-4.11□□□□□ -3.07
CCDC88BA6NC98 SNORD114-13-201ENST00000364377 74 ntBASIC-4.12□□□□□ -3.07
CCDC88BA6NC98 RNU6-381P-201ENST00000391259 108 ntBASIC-4.12□□□□□ -3.07
CCDC88BA6NC98 RNU6-1148P-201ENST00000410992 104 ntBASIC-4.12□□□□□ -3.07
CCDC88BA6NC98 AC080013.6-201ENST00000606185 215 ntBASIC-4.12□□□□□ -3.07
CCDC88BA6NC98 RNU6-340P-201ENST00000364005 107 ntBASIC-4.13□□□□□ -3.07
CCDC88BA6NC98 SNORD18B-201ENST00000365659 72 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 RNU6-1081P-201ENST00000384537 107 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 AC099799.1-201ENST00000439809 192 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 SNORA20.3-201ENST00000516880 132 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 U6.81-201ENST00000612550 106 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 AC024614.3-201ENST00000637860 256 ntBASIC-4.14□□□□□ -3.07
CCDC88BA6NC98 RNU6-451P-201ENST00000362921 107 ntBASIC-4.15□□□□□ -3.07
CCDC88BA6NC98 RNU6-309P-201ENST00000364573 106 ntBASIC-4.15□□□□□ -3.07
CCDC88BA6NC98 RNU6-326P-201ENST00000365480 107 ntBASIC-4.15□□□□□ -3.07
CCDC88BA6NC98 MIR4744-201ENST00000581563 82 ntBASIC-4.15□□□□□ -3.07
CCDC88BA6NC98 RNY3P3-201ENST00000363816 102 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 SNORD81.2-201ENST00000365153 76 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 RNU6-1289P-201ENST00000384431 106 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 MTND1P29-201ENST00000448112 647 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 RN7SKP298-201ENST00000515950 94 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 MIR376A1-201ENST00000616574 68 ntBASIC-4.16□□□□□ -3.08
CCDC88BA6NC98 MIR369-201ENST00000362155 70 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 RNU6-912P-201ENST00000363800 104 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.507-201ENST00000384500 99 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 RNU6-587P-201ENST00000391282 106 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 RNU6-130P-201ENST00000411112 103 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.651-201ENST00000459380 103 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.695-201ENST00000516715 107 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 AC025253.1-201ENST00000613623 543 ntBASIC-4.17□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.88-201ENST00000363029 99 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 RNU6-103P-201ENST00000363686 107 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 RNU6-818P-201ENST00000364837 108 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.467-201ENST00000384297 102 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 RNU6-106P-201ENST00000384405 107 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 SNORD63.2-201ENST00000516303 64 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 AL050303.3-201ENST00000613704 284 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.398-201ENST00000383952 99 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 SNORD116-1-201ENST00000384335 95 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.646-201ENST00000410980 101 ntBASIC-4.18□□□□□ -3.08
CCDC88BA6NC98 RNU6-1119P-201ENST00000384349 108 ntBASIC-4.19□□□□□ -3.08
CCDC88BA6NC98 RNU6-800P-201ENST00000384473 103 ntBASIC-4.19□□□□□ -3.08
CCDC88BA6NC98 RNU7-174P-201ENST00000516248 59 ntBASIC-4.19□□□□□ -3.08
CCDC88BA6NC98 MIR4272-201ENST00000635924 64 ntBASIC-4.19□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.541-201ENST00000384640 113 ntBASIC-4.2□□□□□ -3.08
CCDC88BA6NC98 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-4.2□□□□□ -3.08
CCDC88BA6NC98 MIR3144-201ENST00000579460 79 ntBASIC-4.2□□□□□ -3.08
CCDC88BA6NC98 Y_RNA.339-201ENST00000365325 102 ntBASIC-4.21□□□□□ -3.08
CCDC88BA6NC98 MIR548N-201ENST00000408742 75 ntBASIC-4.21□□□□□ -3.08
CCDC88BA6NC98 RNU5E-3P-201ENST00000515913 68 ntBASIC-4.21□□□□□ -3.08
CCDC88BA6NC98 RNU6-311P-201ENST00000516224 102 ntBASIC-4.21□□□□□ -3.08
CCDC88BA6NC98 RNU6-752P-201ENST00000516376 102 ntBASIC-4.21□□□□□ -3.08
CCDC88BA6NC98 RNU6-645P-201ENST00000364649 106 ntBASIC-4.22□□□□□ -3.08
CCDC88BA6NC98 RNU6-669P-201ENST00000365575 107 ntBASIC-4.22□□□□□ -3.08
CCDC88BA6NC98 MIR122-201ENST00000385044 85 ntBASIC-4.22□□□□□ -3.08
CCDC88BA6NC98 RNU6-1009P-201ENST00000390996 107 ntBASIC-4.22□□□□□ -3.08
CCDC88BA6NC98 AC015540.1-201ENST00000615828 501 ntBASIC-4.22□□□□□ -3.08
CCDC88BA6NC98 RNU6-578P-201ENST00000390980 103 ntBASIC-4.23□□□□□ -3.09
CCDC88BA6NC98 Y_RNA.652-201ENST00000458902 102 ntBASIC-4.23□□□□□ -3.09
CCDC88BA6NC98 AC124864.2-201ENST00000624736 186 ntBASIC-4.23□□□□□ -3.09
CCDC88BA6NC98 MIR379-201ENST00000362218 67 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-290P-201ENST00000365212 101 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-890P-201ENST00000384121 107 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-1113P-201ENST00000384348 107 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 SNORD115-46-201ENST00000390982 71 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 Y_RNA.606-201ENST00000410579 103 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-699P-201ENST00000517081 110 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-310P-201ENST00000384655 107 ntBASIC-4.24□□□□□ -3.09
CCDC88BA6NC98 RNU6-780P-201ENST00000391030 104 ntBASIC-4.25□□□□□ -3.09
CCDC88BA6NC98 RNU6-644P-201ENST00000391155 98 ntBASIC-4.25□□□□□ -3.09
CCDC88BA6NC98 RNU6-530P-201ENST00000391180 107 ntBASIC-4.26□□□□□ -3.09
CCDC88BA6NC98 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-4.26□□□□□ -3.09
CCDC88BA6NC98 AL359920.1-201ENST00000618332 176 ntBASIC-4.26□□□□□ -3.09
CCDC88BA6NC98 SNORD116-2-201ENST00000384274 95 ntBASIC-4.27□□□□□ -3.09
CCDC88BA6NC98 RNU7-151P-201ENST00000516930 53 ntBASIC-4.27□□□□□ -3.09
CCDC88BA6NC98 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-4.27□□□□□ -3.09
CCDC88BA6NC98 Y_RNA.213-201ENST00000364178 111 ntBASIC-4.28□□□□□ -3.09
CCDC88BA6NC98 MIR548D2-201ENST00000384955 97 ntBASIC-4.28□□□□□ -3.09
CCDC88BA6NC98 MTRNR2L9-201ENST00000622562 75 ntBASIC-4.28□□□□□ -3.09
CCDC88BA6NC98 RNU6-681P-201ENST00000364012 104 ntBASIC-4.3□□□□□ -3.1
Retrieved 100 of 98,524 protein–RNA pairs in 248.4 ms